View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13899_low_79 (Length: 208)
Name: NF13899_low_79
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13899_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 6653214 - 6653260
Alignment:
| Q |
13 |
ccaagaatatttgataataaggttaaaaacaatgttcttattgcccg |
59 |
Q |
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| T |
6653214 |
ccaagaacatttgataataaggttaaaaacaatgttctttttgcccg |
6653260 |
T |
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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 160 - 194
Target Start/End: Original strand, 6653353 - 6653387
Alignment:
| Q |
160 |
cttgaacataaaacataattttatcgaaatacatg |
194 |
Q |
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| T |
6653353 |
cttgaacataaaacataattttatcgaaatacatg |
6653387 |
T |
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