View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13899_low_9 (Length: 564)

Name: NF13899_low_9
Description: NF13899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13899_low_9
NF13899_low_9
[»] chr4 (20 HSPs)
chr4 (18-551)||(8447646-8448181)
chr4 (17-551)||(8443446-8443974)
chr4 (58-283)||(8437400-8437625)
chr4 (316-547)||(10460468-10460699)
chr4 (328-551)||(10482036-10482259)
chr4 (311-551)||(10571268-10571508)
chr4 (328-551)||(10467898-10468120)
chr4 (484-542)||(6392835-6392893)
chr4 (430-549)||(53774797-53774916)
chr4 (365-527)||(10464158-10464323)
chr4 (477-551)||(837780-837854)
chr4 (311-361)||(8437307-8437357)
chr4 (490-551)||(829589-829650)
chr4 (390-543)||(6388157-6388310)
chr4 (150-200)||(6387911-6387961)
chr4 (479-543)||(6372451-6372515)
chr4 (316-451)||(6392664-6392799)
chr4 (393-505)||(10475127-10475239)
chr4 (245-292)||(10460379-10460426)
chr4 (245-292)||(10553812-10553859)
[»] chr3 (4 HSPs)
chr3 (316-551)||(25915289-25915524)
chr3 (316-549)||(25901273-25901506)
chr3 (431-532)||(36340073-36340174)
chr3 (253-292)||(25915563-25915602)
[»] chr1 (1 HSPs)
chr1 (332-543)||(50645485-50645696)
[»] chr2 (3 HSPs)
chr2 (427-544)||(25377028-25377145)
chr2 (245-294)||(25376861-25376910)
chr2 (430-534)||(20975515-20975619)
[»] chr7 (14 HSPs)
chr7 (330-533)||(26256632-26256835)
chr7 (441-549)||(22100461-22100569)
chr7 (441-549)||(22063610-22063718)
chr7 (433-527)||(15571911-15572005)
chr7 (430-528)||(16839396-16839494)
chr7 (430-528)||(16846479-16846577)
chr7 (439-549)||(22070077-22070187)
chr7 (439-549)||(22080834-22080944)
chr7 (427-549)||(24002153-24002275)
chr7 (430-543)||(1985955-1986068)
chr7 (374-406)||(26237515-26237547)
chr7 (430-549)||(19344569-19344688)
chr7 (427-549)||(24010337-24010459)
chr7 (477-545)||(660845-660913)
[»] scaffold0867 (1 HSPs)
scaffold0867 (441-549)||(4663-4771)
[»] chr6 (7 HSPs)
chr6 (430-543)||(6935218-6935331)
chr6 (430-543)||(6947880-6947993)
chr6 (431-532)||(5978985-5979086)
chr6 (431-532)||(33568942-33569043)
chr6 (430-541)||(6954521-6954632)
chr6 (426-532)||(33576123-33576229)
chr6 (430-506)||(24254463-24254539)
[»] chr5 (1 HSPs)
chr5 (334-520)||(23086643-23086829)
[»] scaffold0707 (1 HSPs)
scaffold0707 (431-532)||(5336-5437)
[»] chr8 (1 HSPs)
chr8 (477-509)||(42846459-42846491)


Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 18 - 551
Target Start/End: Complemental strand, 8448181 - 8447646
Alignment:
Q  18 aaaatctgaatttgttttaaccccgcgtaattatcgtaagttcttttttggatacgattatttaactgaaacttataaggtgatagcgtttcgtgtgaag 117  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |     
T  8448181 aaaatctgaatttgttttagccccacgtaattatagtaagttcttttttggttacgattatttaactgaaacttataaggtgatagcgtttcgtatggaa 8448082  T
Q  118 ttgtataagaacatgggtgatgcaacaggtatggtgaaagttttaagcattgggaatagttcttggagaaatattcaatgcttactgcttccactttatt 217  Q
    ||| ||||| |||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  8448081 ttggataaggacatcggtactgcaacaggtatggtgaaagttttaagcattgggaatagttcttggagagatattcaatgtttactgcttccactatatt 8447982  T
Q  218 ggtttcaatcttataacaatagtg--cctgtgtgaatttgaatggtactattaactggttggcccttcgcaattactatgacatatatttgaatggtata 315  Q
    |||||||| ||| ||| ||||||   | |||||||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||||||    
T  8447981 ggtttcaaccttgtaataatagtatacatgtgtgaatttgaatggtactattaactggttggcctttcgcaattactttgtcatttatttgaatggtata 8447882  T
Q  316 actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagc 415  Q
    ||||||||||||||| ||||||||||||||| | |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||| |    
T  8447881 actgttgatgaatatatgattgtttcgcttgctatctccaccgagtcacacactcagctgttgttgcctcagggttttgatgaggtgccatgacatcatc 8447782  T
Q  416 cgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtc 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||    
T  8447781 cgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcattttatttggcagatgaaggatttcggagttcatgagtc 8447682  T
Q  516 ttggattcaattatttaaaataagttatcagaattt 551  Q
    ||||||||||||||||||||| | ||||||||||||    
T  8447681 ttggattcaattatttaaaattaattatcagaattt 8447646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Complemental strand, 8443974 - 8443446
Alignment:
Q  17 aaaaatctgaatttgttttaaccccgcgtaattatcgtaagttcttttttggatacgattatttaactgaaacttataaggtgatagcgtttcgtgtgaa 116  Q
    |||||||| |||||||||||  ||| ||||| |||  ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  8443974 aaaaatctaaatttgttttaggcccacgtaagtatactaagttcttttttggttacgattatttgactgaaacttataaggtgatagcgtttcgtgtgaa 8443875  T
Q  117 gttgtataagaacatgggtgatgcaacaggtatggtgaaagttttaagcattgggaatagttcttggagaaatattcaatgcttactgcttccactttat 216  Q
    |||| ||| |  ||  ||| ||||||      ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  8443874 gttggatatgggcaacggtaatgcaa------tggtgaaagttttaagcattgggaatagttcttggagaaatattcaatgtttaatgcttccactttat 8443781  T
Q  217 tggtttcaatcttataacaatagtgcctgtgtgaatttgaatggtactattaactggttggcccttcgcaattactatgacatatatttgaatggtataa 316  Q
    |||| |||| || |||| ||| || || ||||| ||||||||||||||||||| ||||||||| | || ||||||| ||||| |||||||||||||||||    
T  8443780 tggtatcaacctaataataattgtacccgtgtgcatttgaatggtactattaattggttggccgtgcgaaattactttgacaaatatttgaatggtataa 8443681  T
Q  317 ctgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagcc 416  Q
    ||||||  ||||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||| ||| ||||| ||| |||||||||||||||    
T  8443680 ctgttgtcgaatatgtgatagtttcgcttgatctctccaccgagtcacacactcagctgctgttgcctcagggtgttgataaggggccatgtcatcagcc 8443581  T
Q  417 gacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtct 516  Q
     ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  8443580 aacacttgcagttttgatggactgtctttgtttttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtct 8443481  T
Q  517 tggattcaattatttaaaataagttatcagaattt 551  Q
    |||||||||||||||||||| ||||||||||||||    
T  8443480 tggattcaattatttaaaattagttatcagaattt 8443446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 58 - 283
Target Start/End: Complemental strand, 8437625 - 8437400
Alignment:
Q  58 ttcttttttggatacgattatttaactgaaacttataaggtgatagcgtttcgtgtgaagttgtataagaacatgggtgatgcaacaggtatggtgaaag 157  Q
    |||||||| || ||| ||||||| |||||||||||||||||| ||||||||||||||| |||| ||| | |||  ||| |||||| ||||| || |||||    
T  8437625 ttctttttaggttactattatttgactgaaacttataaggtggtagcgtttcgtgtgatgttggatatggacaacggtaatgcaagaggtacggggaaag 8437526  T
Q  158 ttttaagcattgggaatagttcttggagaaatattcaatgcttactgcttccactttattggtttcaatcttataacaatagtgcctgtgtgaatttgaa 257  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||  | ||||||||||| || ||| |||| |||||||    
T  8437525 ttttaagcattgggaatagttcttggagagatattcaatgtttacagcttccactttattggtttggaccttataacaatggttcctatgtgtatttgaa 8437426  T
Q  258 tggtactattaactggttggcccttc 283  Q
    ||||||||||||||||||||||||||    
T  8437425 tggtactattaactggttggcccttc 8437400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 316 - 547
Target Start/End: Original strand, 10460468 - 10460699
Alignment:
Q  316 actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagc 415  Q
    ||||||||  ||||||||||||||||  | ||||||||| | |||  | |||||||||||||||||||||  ||||| |||||||||||| || ||||||    
T  10460468 actgttgagaaatatgtgattgtttcattggatctctcctctgagacatacactcagctgttgttgcctcggggtttcgatgaggtgccacgttatcagc 10460567  T
Q  416 cgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtc 515  Q
    | |||||||  ||||||||||||||||||||||| || |||||||| ||| ||||||||  ||| || || ||||||||| |||||||||||||| ||||    
T  10460568 caacacttgtggttttgatggactgtctttgtttctcttatgattttaagggaactcattttgtgatatgacagatgaagaattttggagttcacgagtc 10460667  T
Q  516 ttggattcaattatttaaaataagttatcaga 547  Q
     |||| |||||||||||  || ||||||||||    
T  10460668 atggactcaattatttattattagttatcaga 10460699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 328 - 551
Target Start/End: Original strand, 10482036 - 10482259
Alignment:
Q  328 tatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcag 427  Q
    ||||||||| |||| ||||||||||| || |||  | |||||||  ||||| | ||||  |||||| || ||||| || ||||||| || |  ||||| |    
T  10482036 tatgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcggggttttaataaggtgtcacgtcatcaaccaaagcttgcgg 10482135  T
Q  428 ttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatt 527  Q
    |||||||||| ||||||||||||    ||||||   ||  |||| ||  |||||| ||||| ||||||||||||||||||||   |||||||||||||||    
T  10482136 ttttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaatt 10482235  T
Q  528 atttaaaataagttatcagaattt 551  Q
    ||||||||| | ||||||||||||    
T  10482236 atttaaaattacttatcagaattt 10482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 311 - 551
Target Start/End: Complemental strand, 10571508 - 10571268
Alignment:
Q  311 gtataactgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtca 410  Q
    |||| ||||||||  |||||||||||||||| ||||||||||| || |||| | ||||| |  ||||| | ||||  |||||||| |||||| | |||      
T  10571508 gtattactgttgagcaatatgtgattgtttcacttgatctctcaactgagtcatacactgaattgttgcttcctcggggttttgacgaggtgtcttgtgt 10571409  T
Q  411 tcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcac 510  Q
    ||| || || ||||  ||||| ||  |||||||||| ||||   ||||||||||| ||| ||||| |||| | ||| | ||||  ||||||||||||||     
T  10571408 tcaaccaacgcttgtggttttaatcaactgtctttgcttttgtcatgatttcaagggaagtcatcttgttttatggaaaatgacagattttggagttcaa 10571309  T
Q  511 aagtcttggattcaattatttaaaataagttatcagaattt 551  Q
     ||||||||||||| || |||||||| |||||| |||||||    
T  10571308 gagtcttggattcagttgtttaaaattagttatgagaattt 10571268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 328 - 551
Target Start/End: Original strand, 10467898 - 10468120
Alignment:
Q  328 tatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcag 427  Q
    ||||||||| |||| ||||||||||| || |||  | |||||||  ||||| | |||| ||||||| || ||||| || |||||||||| |  | ||| |    
T  10467898 tatgtgattctttcacttgatctctcaactgagacatacactcaattgttgctacctcgaggtttt-ataaggtgtcacgtcatcagccaaagcctgcgg 10467996  T
Q  428 ttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatt 527  Q
    |||||||||| |||||||||||     ||||||   ||  |||| ||  |||||| ||||| ||||||||||||||||||||   |||||||||||||||    
T  10467997 ttttgatggattgtctttgtttcggtcatgattatgaggaaacttattttgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaatt 10468096  T
Q  528 atttaaaataagttatcagaattt 551  Q
    ||||||||| | |||| |||||||    
T  10468097 atttaaaattacttataagaattt 10468120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 484 - 542
Target Start/End: Original strand, 6392835 - 6392893
Alignment:
Q  484 tggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagtta 542  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  6392835 tggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 430 - 549
Target Start/End: Original strand, 53774797 - 53774916
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    |||||||| ||| |||||||||| |||||||| ||   |||||||  |||||| ||||| |||||||| ||||||||| |  ||||||||| ||||||      
T  53774797 ttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcc 53774896  T
Q  530 ttaaaataagttatcagaat 549  Q
    ||||||| ||||||||||||    
T  53774897 ttaaaattagttatcagaat 53774916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 527
Target Start/End: Original strand, 10464158 - 10464323
Alignment:
Q  365 acactcagctgttgttgcctcaaggttttgatga---ggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgattt 461  Q
    ||||||| |||||| ||||||  |||||||||||   |||||||  | ||||||| |  ||||  ||||||||||| |||||||||||||  ||||||||    
T  10464158 acactcaactgttgctgcctcggggttttgatgatgaggtgccagattatcagccaaggcttgtggttttgatggattgtctttgtttttgttatgattt 10464257  T
Q  462 caagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatt 527  Q
    | | |  || |||  |||||| ||||| |||||||||||||| | |||  ||||||||||||||||    
T  10464258 ccaaaatacccattttgttatatggcaaatgaaggattttggggatcaggagtcttggattcaatt 10464323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 477 - 551
Target Start/End: Original strand, 837780 - 837854
Alignment:
Q  477 tgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaattt 551  Q
    |||||| ||||| |||||| ||||||| |||||  ||||||||||||||||||||||||| || ||||| |||||    
T  837780 tgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattagctatcataattt 837854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 311 - 361
Target Start/End: Complemental strand, 8437357 - 8437307
Alignment:
Q  311 gtataactgttgatgaatatgtgattgtttcgcttgatctctccaccgagt 361  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  8437357 gtataactgttgatgaaattgtcattgtttcgcttgatctctccaccgagt 8437307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 490 - 551
Target Start/End: Complemental strand, 829650 - 829589
Alignment:
Q  490 atgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaattt 551  Q
    |||||||||||||| |||||  |||||||| |||||||||||||||| |||||||| |||||    
T  829650 atgaaggattttggtgttcaagagtcttgggttcaattatttaaaattagttatcataattt 829589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 543
Target Start/End: Original strand, 6388157 - 6388310
Alignment:
Q  390 ttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcag 489  Q
    ||||||| |||| ||| || ||||||| |  ||||  |||||||||| ||||||||||||||   |||||||  ||  |||||||  |||||| |||||     
T  6388157 ttttgataaggttccacgttatcagccaaagcttgttgttttgatgggctgtctttgtttttgtcatgattttgaggaaactcattctgttatatggcaa 6388256  T
Q  490 atgaaggattttggagttcacaagtcttggattcaattatttaaaataagttat 543  Q
    |||||||||||||| |  ||  |||||||||||||| |||| ||||| ||||||    
T  6388257 atgaaggattttggcgcccaagagtcttggattcaactattaaaaattagttat 6388310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 6387911 - 6387961
Alignment:
Q  150 ggtgaaagttttaagcattgggaatagttcttggagaaatattcaatgctt 200  Q
    ||||||| |||| ||||| ||||||| ||||||||||||||||||||||||    
T  6387911 ggtgaaaattttcagcatggggaataattcttggagaaatattcaatgctt 6387961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 6372451 - 6372515
Alignment:
Q  479 ttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttat 543  Q
    |||| ||||| |||||||||| |||||||||  |||||| ||||||||||| |||||| ||||||    
T  6372451 ttatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagttat 6372515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 451
Target Start/End: Original strand, 6392664 - 6392799
Alignment:
Q  316 actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttga-tgaggtgccatgtcatcag 414  Q
    ||||||||  ||||||||||| |||| || | ||||||||| |||  | ||||| |  ||||| |||||||| ||||| | | ||||||||||| ||||     
T  6392664 actgttgagcaatatgtgattctttcactcg-tctctccactgagacatacactaaattgttgctgcctcaatgtttttaataaggtgccatgttatcaa 6392762  T
Q  415 ccgacacttgcagttttgatggactgtctttgttttt 451  Q
    |||| |||||  ||||||||||||| |||||||||||    
T  6392763 ccgaaacttgtggttttgatggactttctttgttttt 6392799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 505
Target Start/End: Original strand, 10475127 - 10475239
Alignment:
Q  393 tgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatg 492  Q
    |||||||||||||  | ||||||| |  ||||  ||||||||||| |||||||||||||  ||||||||| | |  || |||  |||||| ||||| |||    
T  10475127 tgatgaggtgccaaattatcagccaaggcttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatg 10475226  T
Q  493 aaggattttggag 505  Q
    |||||||||||||    
T  10475227 aaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 10460379 - 10460426
Alignment:
Q  245 gtgtgaatttgaatggtactattaactggttggcccttcgcaattact 292  Q
    ||||| |||||||||||||||||| |||||||||||||| | ||||||    
T  10460379 gtgtgtatttgaatggtactattagctggttggcccttcacgattact 10460426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 10553859 - 10553812
Alignment:
Q  245 gtgtgaatttgaatggtactattaactggttggcccttcgcaattact 292  Q
    ||||| ||||||||||||| |||||||||||| |||||||| ||||||    
T  10553859 gtgtgtatttgaatggtacaattaactggttgacccttcgcgattact 10553812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 316 - 551
Target Start/End: Complemental strand, 25915524 - 25915289
Alignment:
Q  316 actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagc 415  Q
    ||||||||  ||||||||||||||||||||||||| ||||| |||| | |||||||| ||||| ||||||  |||||||| ||||||||| ||  |||||    
T  25915524 actgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctgcctcggggttttgacgaggtgccacgtgttcagc 25915425  T
Q  416 cgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtc 515  Q
    | ||| |||  |||||||||||||  |||||||||    ||||||||||| |||  |||  |||||| ||| | |||||||||||| |||||||  ||||    
T  25915424 caacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtc 25915325  T
Q  516 ttggattcaattatttaaaataagttatcagaattt 551  Q
    |||||||||||| || ||||| ||||||||||||||    
T  25915324 ttggattcaattgttaaaaattagttatcagaattt 25915289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 316 - 549
Target Start/End: Complemental strand, 25901506 - 25901273
Alignment:
Q  316 actgttgatgaatatgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagc 415  Q
    ||||||||  ||||||||||||||||||||||||| ||||| |||| | |||||||| ||||| | ||||  |||||||| ||||||||| ||  |||||    
T  25901506 actgttgagcaatatgtgattgtttcgcttgatctgtccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagc 25901407  T
Q  416 cgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtc 515  Q
    | ||| |||  |||||||||||||  |||||||||    ||||||||||| |||  |||  |||||| ||| | |||||||||||| |||||||  ||||    
T  25901406 caacaattgtggttttgatggactccctttgttttggtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtc 25901307  T
Q  516 ttggattcaattatttaaaataagttatcagaat 549  Q
    |||||||||||| || ||||| ||||||||||||    
T  25901306 ttggattcaattgttaaaaattagttatcagaat 25901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 532
Target Start/End: Original strand, 36340073 - 36340174
Alignment:
Q  431 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 530  Q
    |||||||||| ||||| |||||| | ||||||||||||||| |   ||| || |||||||||||||| ||||||  |||  ||||||||| ||| |||||    
T  36340073 tgatggactgcctttgcttttcacacgatttcaagagaactgaatttgtgatatggcagatgaaggagtttggatctcaagagtcttggactcagttatt 36340172  T
Q  531 ta 532  Q
    ||    
T  36340173 ta 36340174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 292
Target Start/End: Complemental strand, 25915602 - 25915563
Alignment:
Q  253 ttgaatggtactattaactggttggcccttcgcaattact 292  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  25915602 ttgagtggtactattaactggttggcacttcgcaattact 25915563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 543
Target Start/End: Complemental strand, 50645696 - 50645485
Alignment:
Q  332 tgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagtttt 431  Q
    ||||| |||| ||||||||||||||||||  | ||||||| |||||| ||||||  |||||| |  || | ||| || ||||||| ||||||   |||||    
T  50645696 tgattctttcacttgatctctccaccgagacatacactcaactgttgctgcctcggggttttcacaagcttccacgttatcagccaacacttaaggtttt 50645597  T
Q  432 gatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattattt 531  Q
     | ||||  ||||||| |||   |||||||  || ||||||||  |||||| ||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  50645596 aagggacaatctttgtatttttcatgattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattattt 50645497  T
Q  532 aaaataagttat 543  Q
    ||||| ||||||    
T  50645496 aaaattagttat 50645485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 427 - 544
Target Start/End: Original strand, 25377028 - 25377145
Alignment:
Q  427 gttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaat 526  Q
    ||||||| |||||||||||||||||   |||||||  ||  ||  |||  |||||| |||  |||||||||||||||||||||  |||||||||||||||    
T  25377028 gttttgacggactgtctttgtttttgtcatgatttggaggaaaaccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaat 25377127  T
Q  527 tatttaaaataagttatc 544  Q
    |||||||||| |||||||    
T  25377128 tatttaaaattagttatc 25377145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 294
Target Start/End: Original strand, 25376861 - 25376910
Alignment:
Q  245 gtgtgaatttgaatggtactattaactggttggcccttcgcaattactat 294  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||||    
T  25376861 gtgtgtatttgagtggtactattacctggttggcccttcgcaattactat 25376910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 534
Target Start/End: Original strand, 20975515 - 20975619
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    |||||| |||||||||||||| || || ||| |||| ||| ||||  |||||| ||||| |||| ||| ||||||||| |  | |||||||||||||| |    
T  20975515 ttgatgaactgtctttgttttacacattattccaagggaaatcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgt 20975614  T
Q  530 ttaaa 534  Q
    |||||    
T  20975615 ttaaa 20975619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 330 - 533
Target Start/End: Original strand, 26256632 - 26256835
Alignment:
Q  330 tgtgattgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagtt 429  Q
    ||||||| ||||||||||||| || || |||  | |||  ||| ||||| ||||||||||||||||||||||||||| |  ||||||    |||   |||    
T  26256632 tgtgattatttcgcttgatctttcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccatttgttcagccagttcttaaggtt 26256731  T
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    |||||||| || |||||||||||  |||||  ||||  || | ||  |||| | |||||||||||||| | |||||||||  ||||||||| ||||||||    
T  26256732 ttgatggaatgcctttgtttttctcatgataccaaggaaaatgattttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaattat 26256831  T
Q  530 ttaa 533  Q
    ||||    
T  26256832 ttaa 26256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 549
Target Start/End: Original strand, 22100461 - 22100569
Alignment:
Q  441 tctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagt 540  Q
    ||||||||||||  |||||||||| | |||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||| ||||| ||||| |||    
T  22100461 tctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagt 22100560  T
Q  541 tatcagaat 549  Q
    |||||||||    
T  22100561 tatcagaat 22100569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 549
Target Start/End: Original strand, 22063610 - 22063718
Alignment:
Q  441 tctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagt 540  Q
    |||||||||||   ||||||||||   |||||||  |||||| ||||| |||||||| |||||| ||||  ||||||||| ||| ||||| ||||| |||    
T  22063610 tctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagt 22063709  T
Q  541 tatcagaat 549  Q
    |||||||||    
T  22063710 tatcagaat 22063718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 527
Target Start/End: Complemental strand, 15572005 - 15571911
Alignment:
Q  433 atggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatt 527  Q
    ||||| |||||||||||||| |||||||||||| |||| |||  ||| || ||||| |||| ||| ||||||||| |  |||||||| |||||||    
T  15572005 atggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgggttcaatt 15571911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 528
Target Start/End: Complemental strand, 16839494 - 16839396
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatta 528  Q
    ||||||||||| |||||||||||  ||| | | |||| |||||||| |||||| ||| ||||||  |||| |||||||||  ||||||||| |||||||    
T  16839494 ttgatggactgcctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatta 16839396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 528
Target Start/End: Complemental strand, 16846577 - 16846479
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatta 528  Q
    ||||||||||| |||||||||||  ||| | |||||  |||||||| |||||| ||| ||||||  |||| |||||||||  ||||||||| |||||||    
T  16846577 ttgatggactgcctttgtttttctcatgttgtcaagcaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatta 16846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 549
Target Start/End: Original strand, 22070077 - 22070187
Alignment:
Q  439 tgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataa 538  Q
    ||||||||||||||  ||||||||||  ||||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||  ||||| ||||| |    
T  22070077 tgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaatta 22070176  T
Q  539 gttatcagaat 549  Q
    ||||| |||||    
T  22070177 gttataagaat 22070187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 439 - 549
Target Start/End: Original strand, 22080834 - 22080944
Alignment:
Q  439 tgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataa 538  Q
    ||||||||||||||  ||||||||||   |||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||  ||||| ||||| |    
T  22080834 tgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaatta 22080933  T
Q  539 gttatcagaat 549  Q
    |||||||||||    
T  22080934 gttatcagaat 22080944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 549
Target Start/End: Original strand, 24002153 - 24002275
Alignment:
Q  427 gttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaat 526  Q
    |||||||||||| || |||||||||   |||||| |||||||||| |   |||| | ||||| |||||||| |  ||||||||  ||||||||| |||||    
T  24002153 gttttgatggacggtatttgtttttatcatgattccaagagaactgaatttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaat 24002252  T
Q  527 tatttaaaataagttatcagaat 549  Q
    || |||| || ||||||||||||    
T  24002253 tacttaagattagttatcagaat 24002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 430 - 543
Target Start/End: Complemental strand, 1986068 - 1985955
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    |||||||| || || | |||||| ||||||||||||| ||| |||  |||| ||||||| |||||||| ||||| ||| |  | ||||||| |||||| |    
T  1986068 ttgatggattgcctctatttttcttatgatttcaagaaaacccattttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgt 1985969  T
Q  530 ttaaaataagttat 543  Q
    ||||||| ||||||    
T  1985968 ttaaaattagttat 1985955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 26237515 - 26237547
Alignment:
Q  374 tgttgttgcctcaaggttttgatgaggtgccat 406  Q
    |||||||||||||||||||||||||||||||||    
T  26237515 tgttgttgcctcaaggttttgatgaggtgccat 26237547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 549
Target Start/End: Complemental strand, 19344688 - 19344569
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    ||||||||||| |||||||||||  |  || ||||||  ||||||  |||||| |||||||||| ||| ||||||||| |  | ||||||| ||||||      
T  19344688 ttgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttc 19344589  T
Q  530 ttaaaataagttatcagaat 549  Q
    ||||||| |||| |||||||    
T  19344588 ttaaaattagttttcagaat 19344569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 549
Target Start/End: Original strand, 24010337 - 24010459
Alignment:
Q  427 gttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaat 526  Q
    |||||||||||| || |||||||||   |||||| |||||||||| |   |||| | ||||| |||||||| |  || |||||  ||||||||| |||||    
T  24010337 gttttgatggacggtatttgtttttatcatgattccaagagaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaat 24010436  T
Q  527 tatttaaaataagttatcagaat 549  Q
    || |||| || ||||||||||||    
T  24010437 tacttaagattagttatcagaat 24010459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 545
Target Start/End: Complemental strand, 660913 - 660845
Alignment:
Q  477 tgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatca 545  Q
    |||||| |||||||||||||| ||| ||||| |  ||||||||| ||||||  ||||||| ||||||||    
T  660913 tgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatca 660845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 441 - 549
Target Start/End: Complemental strand, 4771 - 4663
Alignment:
Q  441 tctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagt 540  Q
    ||||||||||||  |||||||||| | |||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||| ||||| ||||| |||    
T  4771 tctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagt 4672  T
Q  541 tatcagaat 549  Q
    |||||||||    
T  4671 tatcagaat 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 543
Target Start/End: Complemental strand, 6935331 - 6935218
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    |||||||| || || | |||||| |||||||| |||| ||| ||| ||||||||||||| |||||||| |||||||||||  | ||||||| | ||||      
T  6935331 ttgatggattgcctctatttttcttatgattttaagaaaacccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 6935232  T
Q  530 ttaaaataagttat 543  Q
    ||||||| ||||||    
T  6935231 ttaaaattagttat 6935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 543
Target Start/End: Complemental strand, 6947993 - 6947880
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    |||||||| || |||||||||||| |||||||||||| ||| ||   |||| ||||||| |||||||| ||||||||| |  | ||||||| ||||||      
T  6947993 ttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattcc 6947894  T
Q  530 ttaaaataagttat 543  Q
    ||||||| ||||||    
T  6947893 ttaaaattagttat 6947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 532
Target Start/End: Original strand, 5978985 - 5979086
Alignment:
Q  431 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 530  Q
    ||||||| |||||||| |||||  ||||||||||||||||  |   |||||| |||| ||||||||| |||||||| ||  ||||||||| ||| |||||    
T  5978985 tgatggattgtctttgcttttcgcatgatttcaagagaaccgaatttgttatatggctgatgaaggagtttggagtccaagagtcttggactcagttatt 5979084  T
Q  531 ta 532  Q
    ||    
T  5979085 ta 5979086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 532
Target Start/End: Original strand, 33568942 - 33569043
Alignment:
Q  431 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 530  Q
    ||||||||||| ||||||||||  | ||||||||||| ||| |   ||| || ||| ||||||| || |||||||||||| ||||||||| ||| |||||    
T  33568942 tgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttatt 33569041  T
Q  531 ta 532  Q
    ||    
T  33569042 ta 33569043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 541
Target Start/End: Complemental strand, 6954632 - 6954521
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 529  Q
    |||||||| || || ||||| || ||||||||||| | ||| |||  |||||||||||| |||||||| ||||||||| |  | ||||||| ||||||      
T  6954632 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattga 6954533  T
Q  530 ttaaaataagtt 541  Q
    ||||||| ||||    
T  6954532 ttaaaattagtt 6954521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 532
Target Start/End: Original strand, 33576123 - 33576229
Alignment:
Q  426 agttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaa 525  Q
    |||| |||||||||| |||||||||||  | ||||| ||| ||||| |   |||||| |||  ||||||||| |||||||||||  ||||||||| |||     
T  33576123 agttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcag 33576222  T
Q  526 ttattta 532  Q
    |||||||    
T  33576223 ttattta 33576229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 506
Target Start/End: Complemental strand, 24254539 - 24254463
Alignment:
Q  430 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagt 506  Q
    ||||||||||| |||||||||||  |  || ||||||||||||||  |||||| |||||||||  ||| ||||||||    
T  24254539 ttgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagt 24254463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 334 - 520
Target Start/End: Original strand, 23086643 - 23086829
Alignment:
Q  334 attgtttcgcttgatctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttga 433  Q
    ||||||||||||||||| || || |||  | |||  ||| ||||| ||||||||||||||||||||||||||    |||||||  | |||   ||| |||    
T  23086643 attgtttcgcttgatctatcaacggagacatacaagcagttgttgctgcctcaaggttttgatgaggtgccagaatatcagccatctcttcatgttctga 23086742  T
Q  434 tggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttgga 520  Q
     |||||| ||||| |||||  ||||||| ||||  | | |   |||||| |||||||||||||| |||||||||||  |||||||||    
T  23086743 aggactgcctttgcttttcgcatgattttaagacgattgaatttgttatatggcagatgaaggagtttggagttcaagagtcttgga 23086829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 431 - 532
Target Start/End: Original strand, 5336 - 5437
Alignment:
Q  431 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 530  Q
    ||||||||||| ||||||||||  | ||||||||||| ||| |   ||| || ||| ||||||| || |||||||||||| ||||||||| ||| |||||    
T  5336 tgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttatt 5435  T
Q  531 ta 532  Q
    ||    
T  5436 ta 5437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 509
Target Start/End: Complemental strand, 42846491 - 42846459
Alignment:
Q  477 tgttatttggcagatgaaggattttggagttca 509  Q
    |||||||||||| ||||||||||||||||||||    
T  42846491 tgttatttggcaaatgaaggattttggagttca 42846459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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