View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_high_13 (Length: 440)
Name: NF1389_high_13
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 46 - 429
Target Start/End: Complemental strand, 4162498 - 4162106
Alignment:
| Q |
46 |
acaaaaagtttgattatctatgccaacttagtacctgaatgacctttttgtttgaatcagtttacaaattagaaattcgaacataa---gtcacaactga |
142 |
Q |
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| T |
4162498 |
acaaaaagtttgattatctataccaactcagtacctaaatgacctttttgtttgaatcagtttataaat-agaaattcgaacctaattagtcacaactga |
4162400 |
T |
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| Q |
143 |
tgcaagcgaaaggttcgattatatgtgacagcttgttata---------gccttttatatgattacatctgttggcaaatcaatttcccattttgctttg |
233 |
Q |
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| T |
4162399 |
tgcaagcgaaaggtccgattatatgtgacagcttgttatatgctgtatagccttttatgt--ttgcatctgttggcaaatcaatttcccattttgctttg |
4162302 |
T |
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| Q |
234 |
tagttagcaaaagcaaataatactactaaatagtctctctttttgttttaagtaaaaatgagggcacatagggaaagaagctataatatagccttttcag |
333 |
Q |
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| T |
4162301 |
tagttagcaaaagcaaataatactactaaatagtctctctttttgttttaagtaaaaatgagggcacatagggaaagaagctataatatagccttttcag |
4162202 |
T |
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| Q |
334 |
ttatgatcatccttagtattcactcttacgaccctcctttttggtattgccgtgttaaccttgctttataagctttaattaatctacatgatattc |
429 |
Q |
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| T |
4162201 |
ttatgatcatccttagtattcactcttacgaccctcttttttggtattgccgtgttaaccttgctttataagctttaattaatctacatgatattc |
4162106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 4162610 - 4162534
Alignment:
| Q |
40 |
atgcaaacaaaaagtttgattatctatgccaacttagtacctgaatgacctttttgtttgaatcagtttacaaatta |
116 |
Q |
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| T |
4162610 |
atgcaaacaaaaagtatgattatctatgccaacccagtacctaaatgacctttttgtttgaatcaattgacaaatta |
4162534 |
T |
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