View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_high_15 (Length: 408)
Name: NF1389_high_15
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 398
Target Start/End: Original strand, 37032587 - 37032979
Alignment:
| Q |
5 |
cacagccgtcgtggaaaggaggtcgcttttgccggcaacagtgagccggaagtctgtgctccggcagctcagggttagagataacagaaacaagtcatca |
104 |
Q |
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| T |
37032587 |
cacagccgtcgtggaaaggaggtcgcttttgccggcaacagtgagccggaagtctgtgctccggcagctcagggttagagataacagaaacaagtcatca |
37032686 |
T |
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| Q |
105 |
ctcttgggaaccattcacaaggtgagaccccaattaacattttttcttagtcttttgttttacacattttcataaaacttaccgttaaataaatctaaat |
204 |
Q |
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| T |
37032687 |
ctcttgggaaccattcacaaggtgaaaccccaattaacattttttcttagtcttttgttttacacattttcataaaacttaccgttaaataaatctaaat |
37032786 |
T |
|
| Q |
205 |
tacctcgacgaattaatctatacaattacgctcgatgagagtaattgttttgaatcacattcttattgttttgttaattactatactttgttgcagacat |
304 |
Q |
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| T |
37032787 |
tacctcgacgaattaatctatacaatt-cgtgcgatgagagtaattgttttgaatcactttcttattgttttgttaattactatactttgttgcagacat |
37032885 |
T |
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| Q |
305 |
ggcgtagaactgtagaaggtgcctctagagttttcatggaaaagcattataaccgtcataagcgtttgatcaatgatattgtttaggctctctg |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37032886 |
ggcgtagaactgtagaaggtgcctctagagttttcatggaaaagcattataaccgtcataagcgtttgatcaatgatattgtttaggctctctg |
37032979 |
T |
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