View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_high_16 (Length: 399)
Name: NF1389_high_16
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 40 - 389
Target Start/End: Complemental strand, 34450933 - 34450594
Alignment:
| Q |
40 |
agccattaataataatattacgataaaatcttacaaggctagctaatgttaataatgtgggtgagtgttgacagagatatttgaaaaattcaaaaacaat |
139 |
Q |
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| T |
34450933 |
agccattaataataatattacgataaaatctcacaaggcta----------ataatgtgggtgaatgttgacagagatatttgaaaaattcaaaaacaat |
34450844 |
T |
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| Q |
140 |
aaaggaagcttgaatgaaaatatttccaaagatgtacaaggaatgtggagtttgtacgaggctgcacaattaaggattcatgatgaagatatattagatg |
239 |
Q |
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| T |
34450843 |
aaaggaagcttgaatgaaaatatttccaaagatgtacaaggaatgtggagtttgtacgaggctgcacaattaaggattcatgatgaagatatattagatg |
34450744 |
T |
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| Q |
240 |
aagcacttgatttcacatactctcaccttaattcccttatcaccaatgaattgagtccttttcttgctaaacaactatgccaatgcttaaggacacctct |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34450743 |
aagcacttgatttcacatactctcaccttaattcccttatcaccaatgaattgagtccttttcttgctaaacaactatgccaatgcttaaggacacctct |
34450644 |
T |
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| Q |
340 |
tcacaagggagttcctaggttagagacaaggtgttatatttcttcctatg |
389 |
Q |
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| T |
34450643 |
tcacaagggagttcctaggttagagacaaggtgttatatttcttcctatg |
34450594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 107 - 389
Target Start/End: Complemental strand, 34461625 - 34461343
Alignment:
| Q |
107 |
ttgacagagatatttgaaaaattcaaaaacaataaaggaagcttgaatgaaaatatttccaaagatgtacaaggaatgtggagtttgtacgaggctgcac |
206 |
Q |
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| T |
34461625 |
ttgacagatatatttgaaaaattcaaaaaccctaaaggaaacttcaatgaaaagatttccaaagatatacaaggaatgtggaggttgtacgaagccgcac |
34461526 |
T |
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| Q |
207 |
aattaaggattcatgatgaagatatattagatgaagcacttgatttcacatactctcaccttaattcccttatcaccaatgaattgagtccttttcttgc |
306 |
Q |
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| T |
34461525 |
atttaatgattcatggtgaagatatattagatgaagcacttgatttcacatactctaaactaaataccttggaaaccaatcaagtgagtccttttcttgc |
34461426 |
T |
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| Q |
307 |
taaacaactatgccaatgcttaaggacacctcttcacaagggagttcctaggttagagacaaggtgttatatttcttcctatg |
389 |
Q |
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| T |
34461425 |
tacacaagtacgtcactgcttaaagacacctctttacaagagagttcctagggttgagataaggtgttacatttcttcctatg |
34461343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 107 - 388
Target Start/End: Complemental strand, 34487341 - 34487060
Alignment:
| Q |
107 |
ttgacagagatatttgaaaaattcaaaaacaataaaggaagcttgaatgaaaatatttccaaagatgtacaaggaatgtggagtttgtacgaggctgcac |
206 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||| ||| |||||||| ||| |||||||||||| ||||||||| ||||| || || |||| |
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| T |
34487341 |
ttgacagatatatttgaaaaattcaaaaacaacaaaggaaacttcaatgaaaagctttttcaagatgtacaagaaatgtggagcttgtatgaagccgcac |
34487242 |
T |
|
| Q |
207 |
aattaaggattcatgatgaagatatattagatgaagcacttgatttcacatactctcaccttaattcccttatcaccaatgaattgagtccttttcttgc |
306 |
Q |
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|||||| ||| ||| |||||||||| || ||||||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||||||||||||| |
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| T |
34487241 |
aattaaagataaatggtgaagatatactaaatgaagcacttgatttcacattctctcacctaaattccttgatcaccaataaattgagtccttttcttga |
34487142 |
T |
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| Q |
307 |
taaacaactatgccaatgcttaaggacacctcttcacaagggagttcctaggttagagacaaggtgttatatttcttcctat |
388 |
Q |
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||| || || |||| ||||||| |||||||||||||||||| || |||||||| ||||||||||| || |||||||||||| |
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| T |
34487141 |
gaaaaaaatacgccattgcttaaagacacctcttcacaagggggtccctaggttggagacaaggtgctacatttcttcctat |
34487060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 107 - 389
Target Start/End: Complemental strand, 34475405 - 34475123
Alignment:
| Q |
107 |
ttgacagagatatttgaaaaattcaaaaacaataaaggaagcttgaatgaaaatatttccaaagatgtacaaggaatgtggagtttgtacgaggctgcac |
206 |
Q |
| |
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|||||||| |||||| ||| |||||| | ||||| ||| ||||| ||||||| ||||| ||||||| |||||||||||||| ||||| || | |||| |
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| T |
34475405 |
ttgacagatatatttaaaatattcaagagcaatagagggagcttcgatgaaaaggtttccgaagatgttcaaggaatgtggagcttgtatgaaacagcac |
34475306 |
T |
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| Q |
207 |
aattaaggattcatgatgaagatatattagatgaagcacttgatttcacatactctcaccttaattcccttatcaccaatgaattgagtccttttcttgc |
306 |
Q |
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| |||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| || ||||| ||||||||| |
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| T |
34475305 |
atttaaagattcatggagaagatatattagatgaagcacttgatttcacatatgctcaccttaattccaaaacttccaatcaaatgagtacttttcttga |
34475206 |
T |
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| Q |
307 |
taaacaactatgccaatgcttaaggacacctcttcacaagggagttcctaggttagagacaaggtgttatatttcttcctatg |
389 |
Q |
| |
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| | || || | |||||||||| | ||||| |||||||||||||||||||| |||||||||||||| || |||||||||| |
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| T |
34475205 |
tgcaaaagtaagacaatgcttaaaaaaccctctacacaagggagttcctaggttggagacaaggtgttacatatcttcctatg |
34475123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 74 - 360
Target Start/End: Original strand, 6129337 - 6129623
Alignment:
| Q |
74 |
aaggctagctaatgttaataatgtgggtgagtgttgacagagatatttgaaaaattcaaaaacaataaaggaagcttgaatgaaaatatttccaaagatg |
173 |
Q |
| |
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||||||||||||| |||||| ||| ||||| | | ||||||||||||||||||||||||||| ||| ||| || ||| |||||||| |||||||||||| |
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| T |
6129337 |
aaggctagctaatattaatattgttggtgaatttcgacagagatatttgaaaaattcaaaaataatgaagaaaacttcaatgaaaagctttccaaagatg |
6129436 |
T |
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| Q |
174 |
tacaaggaatgtggagtttgtacgaggctgcacaattaaggattcatgatgaagatatattagatgaagcacttgatttcacatactctcaccttaattc |
273 |
Q |
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|||||||||||||||| ||||| || ||| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
6129437 |
tacaaggaatgtggagcttgtatgaagctacacaattaagggttcataatgaagatatactagatgaagcacttgatttcacatactctcacctcaattc |
6129536 |
T |
|
| Q |
274 |
ccttatcaccaatgaattgagtccttttcttgctaaacaactatgccaatgcttaaggacacctcttcacaagggagttcctaggtt |
360 |
Q |
| |
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| |||| || | |||||||||||||||| || |||| || | | ||||||| |||||| |||||||||||||||||||||| |
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| T |
6129537 |
ctacatcaacactcaattgagtccttttctatgtacacaaatacgtcgctgcttaaatacaccttttcacaagggagttcctaggtt |
6129623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 107 - 387
Target Start/End: Complemental strand, 1595011 - 1594728
Alignment:
| Q |
107 |
ttgacagagatatttgaaaaattcaaaaacaataaaggaagcttgaatgaaaatatttccaaagatgtacaaggaatgtggagtttgtacgaggctgcac |
206 |
Q |
| |
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|||||||| |||||| |||| ||||| ||||||| || ||||| ||||||| || |||||||| |||||||||||||| ||||| || || || | |
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| T |
1595011 |
ttgacagatatatttaaaaatttcaagaacaatatggggagcttcgatgaaaaggttgtgaaagatgttcaaggaatgtggagcttgtatgaagcagcgc |
1594912 |
T |
|
| Q |
207 |
aattaaggattcatgatgaagatatattagatgaagcacttgatttcacatactctcaccttaattcc---cttatcaccaatgaattgagtccttttct |
303 |
Q |
| |
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| |||| |||||||| |||||||||||||||||||| |||| ||||||| | |||||||||||||| ||| || || |||||||||||||||| |
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| T |
1594911 |
atttaaagattcatggagaagatatattagatgaagcgcttgttttcacacatgctcaccttaattccaaaattaatactaaccaattgagtccttttct |
1594812 |
T |
|
| Q |
304 |
tgctaaacaactatgccaatgcttaaggacacctcttcacaagggagttcctaggttagagacaaggtgttatatttcttccta |
387 |
Q |
| |
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|| | |||| || | |||||||| |||| |||||| ||||||||| |||||||||| ||||||||| |||| || |||||||| |
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| T |
1594811 |
tgatgcacaaataagacaatgcttgaggaaacctctacacaagggaattcctaggttggagacaaggagttacatatcttccta |
1594728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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