View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_high_25 (Length: 265)
Name: NF1389_high_25
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 37495747 - 37495599
Alignment:
| Q |
12 |
agagacctatacattttttagtgagagttagatcaaattaagtgtagttagattcacatatgaatatctagnnnnnnnnntac-ttaagagattaatgag |
110 |
Q |
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| T |
37495747 |
agagacctataaattttatagtgagagttagatcaaattaagtgtagttagattcacatatgaatatctagaaaaaaaaatactttaagtgattaatgag |
37495648 |
T |
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| Q |
111 |
ttggactaaaatatagtttatataataaaacatcat-actttctctaaa |
158 |
Q |
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| T |
37495647 |
ttggattaaaatataatttatataataaaacatcatgactttctctaaa |
37495599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 37495576 - 37495498
Alignment:
| Q |
176 |
catcatgacttaagttgatccatgtggtcgctccattcgatgggaaaatgcttgcttgttgtcgtatatattgttcgct |
254 |
Q |
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| T |
37495576 |
catcatgatttaagttgatccatgtggtcgctccatttggtggaaaaatgtttggttgttgttgtatatattattcgct |
37495498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 16971858 - 16971826
Alignment:
| Q |
100 |
agattaatgagttggactaaaatatagtttata |
132 |
Q |
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| T |
16971858 |
agattaatgagttggactgaaatatagtttata |
16971826 |
T |
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