View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_high_39 (Length: 243)
Name: NF1389_high_39
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2551193 - 2550966
Alignment:
| Q |
1 |
caaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcctcgatatgtcacatctctcaccgacacagctgtatcct |
100 |
Q |
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| T |
2551193 |
caaccagaagaactacactttaaatcaattgctatatcactataagaagttccggtaaatcctcgatatgtcacatctctcaccgacacagctgtatcct |
2551094 |
T |
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| Q |
101 |
gttaattaatttcaacaaaattcaatatgatatataaaactattagctaacag---tgaaataatactttgttgaaatatatgtacgtaccagtgtacta |
197 |
Q |
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| T |
2551093 |
gataattaatttcaacaaaattcaatatgatatataaaac---tagctaacagtgttgaaatgaagatat----aaatatatgtacgtaccagtgtacta |
2551001 |
T |
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| Q |
198 |
agagtgtaagcctgatctattattatcgggttcat |
232 |
Q |
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| T |
2551000 |
agagtgtaagcctgatctattattatcgggttcat |
2550966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 1831864 - 1831820
Alignment:
| Q |
46 |
gaagttccggtaaatcctcgatatgtcacatctctcaccgacaca |
90 |
Q |
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| T |
1831864 |
gaagttccagtaaatcctcgatatgtcacatcactcaccgacaca |
1831820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 1866307 - 1866263
Alignment:
| Q |
46 |
gaagttccggtaaatcctcgatatgtcacatctctcaccgacaca |
90 |
Q |
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| T |
1866307 |
gaagttccagtaaatcctcgatatgtcacatcactcaccgacaca |
1866263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2556803 - 2556730
Alignment:
| Q |
1 |
caaccagatgaactacactttaaatcaattgctatatcactagaagaagttccggtaaatcctcgatatgtcac |
74 |
Q |
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| T |
2556803 |
caaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcgatatgtcac |
2556730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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