View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_high_5 (Length: 535)
Name: NF1389_high_5
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 30 - 534
Target Start/End: Original strand, 30009465 - 30009969
Alignment:
| Q |
30 |
gtaagaaaatctttattgtgattacaaatactcaatttcaagtttccttttgaaaaccgacctccaatttttgttctatgcagtttgaaagctcgatatc |
129 |
Q |
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| T |
30009465 |
gtaagaaaatctttattgtgattacaaatactcaatttcaagtttccttttgaaaaccgacctccaatttttgttctatgcagtttgaaagctcgatatc |
30009564 |
T |
|
| Q |
130 |
tgttgagacaaatccactgtatgctcttctacatgaatccatctattgtcaggtaaaacttcttttgagttgctcttgtatgcaactattgtgaaagtct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30009565 |
tgttgagacaaatccactgtatgctcttctacatgaatccatctattgtcaggtaaaacttcttttgagttgctcttgtatgcaactattgtgaaagtct |
30009664 |
T |
|
| Q |
230 |
aggctgataggtaaagacacacgcatgattttatattatactattgtcaacatgtctcacatccaactaagtatcctttgtctcgaagtattaacaatgc |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
30009665 |
aggctgataggtaaagacacacgcatgattttatattatactattgtcaacatgtctcacatctaactaagtatcctttgtctcgaagtattaacaatgc |
30009764 |
T |
|
| Q |
330 |
ttaggcttacctgccttgcgctaaaatttaactttttatcagaagaatgagagcatcaaagattgaactctggaccactcggtcacagaggctctgatac |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30009765 |
ttaggcttacctgccttgcgctaaaatttaactttttatcagaagaatgagagcatcaaagattgaactctggaccactcggtcacaggggctctgatac |
30009864 |
T |
|
| Q |
430 |
catgtcatgaaccgctaacctgaaattctattattgttgggtaacggcatacaaatagttttatattatatctctaacatgcatgatctgttcatctcac |
529 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
30009865 |
catgtcatgaaccgctaacctgaaattctaatattgttgggtaacggcatacaaatagttttatattatatctctaacatgcatgatctgttgttctccc |
30009964 |
T |
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| Q |
530 |
tcgac |
534 |
Q |
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| T |
30009965 |
tcgac |
30009969 |
T |
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