View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1389_high_6 (Length: 459)
Name: NF1389_high_6
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 6588074 - 6587633
Alignment:
| Q |
1 |
aaaggagaaacaatgtacacagagtttcagaagtacaactcaaaattatattggaggtaacaaagattattctaatacaatgcatattcttaaagccgca |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6588074 |
aaaggagaaacaatgcacacaaagtttcagaagtacaactcaaaattatattggaggtaacaaagattattctaatacaatgcatattcttaaagccgca |
6587975 |
T |
|
| Q |
101 |
aggtctcacnnnnnnnnnn-gagggcttggttaggatattatataaaaaaggcaatttttggctgtttgcatttgcactagaatgcgagcttccatattt |
199 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6587974 |
aggtctcacaaaaaaaaaaagagggcttggttaggatattatataaaaaaggccatttttggctgtttgcatttgcactagaatgcgagcttccatattt |
6587875 |
T |
|
| Q |
200 |
caagttttcctaaagccaaagtgcaccagcttctctaagcattttcttgagtgagccattgagatgaagggtcatgattatgttggctgaacccacaaac |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6587874 |
caagttttcctaaagccaaagtgcaccagcttctctaagcattttcttgagtgagccattgagatgaagggtcatgattatgttggctgaacccacaaac |
6587775 |
T |
|
| Q |
300 |
ttgccaccaatgaacactgctggaacactagggttgcatcctaatcttatgagagcccattccatttccttccccctcttatcttcatctagctcataga |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
6587774 |
ttgccaccaatgaacactgctggaacactagggttgcatcctaatcttatgagagcccattccatttccctccccctcttatcttcatctagttcataga |
6587675 |
T |
|
| Q |
400 |
ttgctggaccaacaccttgctcataaaatagtctcttaattg |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6587674 |
ttgctggaccaacaccttgctcataaaatagtctcttaattg |
6587633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University