View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_low_1 (Length: 825)
Name: NF1389_low_1
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_low_1 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 674; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 674; E-Value: 0
Query Start/End: Original strand, 13 - 759
Target Start/End: Original strand, 10162132 - 10162874
Alignment:
| Q |
13 |
aatatctaccttttgaagactcgcgctactatagtatcttggttggtttcagggctccaacattgcttctctaacatagccaaattaaatcatatgtatg |
112 |
Q |
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| T |
10162132 |
aatatctaccttttgaagactcgcgctactatagtatcttggttggtttcagggctccaacattgcttctctaacatagccaaaataaatcatatgtatg |
10162231 |
T |
|
| Q |
113 |
ttgagaacccatatatcaccgtgttcctttctcatagccatcttcttccatcttcgctaattgtttccttttccatcatgtttattggaccctcccacca |
212 |
Q |
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| T |
10162232 |
tcgagaacccatatatcaccgtgttcctttctcatagccagcttcttccatcttcgctaattgtttccttttccatcatgtttattggaccctcccacca |
10162331 |
T |
|
| Q |
213 |
aaaggaattcaacattttttgaatttcatcccctaaagttgttggcaagaggaatgaactcataaaatattaaagcttataaattataacaattgagatt |
312 |
Q |
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| T |
10162332 |
aaaggaattcaacattttttgaatttcatcccctaaagttgttggcaagaggaatgaactcataaaatattaaagcttataaattataacaattgagatt |
10162431 |
T |
|
| Q |
313 |
aactgatattaaatgataatgtnnnnnnnnttacacattcatttaatgatatatcatcaaatagataattataagaattaataaattaaagaggcataga |
412 |
Q |
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| T |
10162432 |
aactgatattaaatgataatgtaaaaaaaattacacattcatttaatgatatatcatcaaatagataattataagaattaataaattaaagaggcataga |
10162531 |
T |
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| Q |
413 |
gacacattaagtaactaaatcgatggagaagtttgaaaatgggggtggagtttgttttcttggaaggagagtttgtgggggagtgtggtgagcatatggg |
512 |
Q |
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| T |
10162532 |
gacacattaa----ctaaatcgatggagaagtttgaaaatggcggtggagtttgttttcttgggaggagagtttgtgggggagtgtggtgagcatatggg |
10162627 |
T |
|
| Q |
513 |
tttgaaaccttcattcttcccatcgttatacggtgatcaatgcttatcaaagtttgaccgaagaagctgagcgagaatcttataacaacggttcaattat |
612 |
Q |
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| T |
10162628 |
tttgaaaccttcattcttcccatcgttatacggtgatcaatgcttatcaaagtttgaccgaagaagctgagcgagaatcttataacaacagttcaattat |
10162727 |
T |
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| Q |
613 |
aaacgataatctgttatggataaaagaaatttcgttaaaaataaatttgttttcttgttgtttgattcttaatcgaattccaacgagagaaaacttagat |
712 |
Q |
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| T |
10162728 |
aaacgataatctgttatggataaaagaaatttcgttaaaaataaatttgttttcttgttgtttgattcttaatcgaattccaacgagagaaaacttagtt |
10162827 |
T |
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| Q |
713 |
cggtggaatgttctttcgaacaatgtccaaatttgtacgactgagtg |
759 |
Q |
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| T |
10162828 |
cggtggaatgttcttttgaacaatgtccaaatttgtacgactgagtg |
10162874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 24 - 273
Target Start/End: Complemental strand, 30043 - 29798
Alignment:
| Q |
24 |
tttgaagactcgcgctactatagtatcttggttggtttcagggctccaacattgcttctctaacatagccaaattaaatca-tatgtatgttgagaaccc |
122 |
Q |
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||||||||||||| |||||||||||||||||||||||| | ||||||| ||||||| ||| |||| |||||||||||| || |||| | ||| | |
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| T |
30043 |
tttgaagactcgctttactatagtatcttggttggtttctagcctccaaccttgcttccctagcatacccaaattaaatctgtacagatgtaaaaaactc |
29944 |
T |
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| Q |
123 |
atatatcaccgtgttcctttctcatagccatcttcttccatcttcgctaattgtttccttttccatcatgtttattggaccctcccaccaaaaggaattc |
222 |
Q |
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| T |
29943 |
atac--cactgtgttcttttctcatagctagcttgtcccattttagcaaatttattcgttttccatcatttgtatttgaccc--ccaccaaaaagaattc |
29848 |
T |
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| Q |
223 |
aacattttttgaatttcatcccctaaagttgttggcaagaggaatgaactc |
273 |
Q |
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| T |
29847 |
aacatttttt-aatttcatctcctaaggttgttgacaagaggaatgaactc |
29798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 509 - 561
Target Start/End: Original strand, 14956779 - 14956831
Alignment:
| Q |
509 |
tgggtttgaaaccttcattcttcccatcgttatacggtgatcaatgcttatca |
561 |
Q |
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| T |
14956779 |
tgggtttgaaaacttcattcttcccatcgttatacaatgcacaatgcttatca |
14956831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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