View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1389_low_18 (Length: 433)

Name: NF1389_low_18
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1389_low_18
NF1389_low_18
[»] chr2 (3 HSPs)
chr2 (1-404)||(42071522-42071930)
chr2 (307-399)||(28528939-28529031)
chr2 (343-399)||(42530865-42530921)
[»] chr8 (4 HSPs)
chr8 (316-401)||(1336278-1336363)
chr8 (302-399)||(14539388-14539485)
chr8 (305-393)||(37728285-37728373)
chr8 (317-396)||(42163874-42163954)
[»] chr4 (7 HSPs)
chr4 (302-395)||(13028983-13029076)
chr4 (305-401)||(47551897-47551993)
chr4 (302-393)||(13035656-13035747)
chr4 (308-398)||(22087627-22087717)
chr4 (341-384)||(32946004-32946047)
chr4 (343-401)||(26333105-26333163)
chr4 (302-393)||(46732782-46732873)
[»] chr3 (8 HSPs)
chr3 (300-399)||(1902006-1902105)
chr3 (300-399)||(1911452-1911551)
chr3 (302-401)||(44441776-44441875)
chr3 (304-399)||(35864077-35864172)
chr3 (300-399)||(10480557-10480656)
chr3 (346-398)||(7729708-7729760)
chr3 (302-393)||(34962403-34962494)
chr3 (302-399)||(21984156-21984253)
[»] chr1 (9 HSPs)
chr1 (302-401)||(46396444-46396543)
chr1 (302-401)||(1282354-1282452)
chr1 (302-401)||(1283385-1283483)
chr1 (302-399)||(37245044-37245142)
chr1 (319-399)||(21487318-21487397)
chr1 (306-381)||(30282541-30282616)
chr1 (319-379)||(19967223-19967283)
chr1 (304-399)||(27850624-27850719)
chr1 (302-399)||(42773376-42773473)
[»] scaffold0245 (1 HSPs)
scaffold0245 (302-401)||(8034-8132)
[»] scaffold0229 (1 HSPs)
scaffold0229 (302-401)||(8362-8460)
[»] chr6 (3 HSPs)
chr6 (316-399)||(6822707-6822790)
chr6 (302-399)||(11769760-11769857)
chr6 (302-399)||(33106707-33106804)
[»] chr7 (2 HSPs)
chr7 (312-370)||(46232377-46232435)
chr7 (302-399)||(23756472-23756569)
[»] chr5 (5 HSPs)
chr5 (316-399)||(4930779-4930861)
chr5 (302-363)||(22399343-22399404)
chr5 (302-399)||(29368669-29368766)
chr5 (302-399)||(15727049-15727146)
chr5 (302-399)||(15810894-15810991)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 42071930 - 42071522
Alignment:
Q  1 tcacctatttaacattaagttaaatagatattgtttttatgtagtaagaaaaattgatgcttatcgaaaataagattatagaagcatcatatatttcatt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  42071930 tcacctatttaacatcaagttaaatagatattgtttttatgtagtaagaaaaattgatgcttatcgagaataagattataaaagcatcatatatctcatt 42071831  T
Q  101 actattcataaatcccacttaaagaattgtattaaaatgcatatgttccttcaaatgtaatgatataaatctattgtggtgagat----cctttgaggtg 196  Q
    ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    |||||||||||    
T  42071830 acttttcatgaatctcacttaaagaattgtattaaaatgcatatgttccttcaaatgtaatgatataaatctattgtagtgagatccttcctttgaggtg 42071731  T
Q  197 tgagggtttgaagtttgtttcaagttttacattgccgatgacagatgcatgttgttctatgtgtgtacatgtgcacacacaaaaaatttagaaac-nnnn 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         
T  42071730 tgagggtttgaagtttgtttcaagttttacattgccgatgacagatgcatgttgttctatgtgtggacatgtgcacacacaaaaaatttagaaacttttt 42071631  T
Q  296 nnnnaatagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatct 395  Q
        ||||||||||| |||||||||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42071630 ttttaatagtataatgtactaatagttggcattttgatcacatgatccacacttatcacaaatcatttctctcttggtccacacctatcatcatatatct 42071531  T
Q  396 caaacttta 404  Q
    |||||||||    
T  42071530 caaacttta 42071522  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 28528939 - 28529031
Alignment:
Q  307 taatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    |||| ||| |||| |||||||||||||||| ||  |||||||||||| |||  |||||||| ||||||||||| |||||||||||||||||||    
T  28528939 taatgtaccaataattgacattttgatcacatggtccacacttatcagaaataatttctcttttggtccacacatatcatcatatatctcaaa 28529031  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 399
Target Start/End: Original strand, 42530865 - 42530921
Alignment:
Q  343 cacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    |||||||| ||||||  || | |||||||| |||||| |||||||||||||||||||    
T  42530865 cacacttaacacaaattatatttctcttggcccacacttatcatcatatatctcaaa 42530921  T

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Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 316 - 401
Target Start/End: Complemental strand, 1336363 - 1336278
Alignment:
Q  316 aatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  1336363 aatagttgacattttgatcacatgaaccacacttatcacaaaacatttctctcttggcccacacttatcatcatatatctcaaact 1336278  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 14539388 - 14539485
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| |||  ||| |||||||||| || || ||  ||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||    
T  14539388 tagtataatgtacccataattgacattttaattacatggtccacacttaacacaaatcatttctctcttggcccacacctataatcatatatctcaaa 14539485  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 37728285 - 37728373
Alignment:
Q  305 tataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatat 393  Q
    |||||||||  |||||||||||||| ||| |  ||   |||||||| |||||| ||||||||||||  |||||||||||||||||||||    
T  37728285 tataatatatcaatagttgacatttggattagatggttcacacttaccacaaatcatttctctctttttccacacctatcatcatatat 37728373  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 42163874 - 42163954
Alignment:
Q  317 atagttgacattttgatcacttgacccacacttatcacaaaccatttctctc-ttggtccacacctatcatcatatatctc 396  Q
    |||||||||||||||| ||| ||||  ||| || ||||||| |||||||||| ||||| ||||| ||||||||||||||||    
T  42163874 atagttgacattttgaccacatgacttacatttctcacaaatcatttctctctttggttcacacatatcatcatatatctc 42163954  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 13029076 - 13028983
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatct 395  Q
    ||||||||| ||| ||||||||||||||||| ||| ||| |||||||||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  13029076 tagtataatgtacgaatagttgacattttgaccacatgatccacacttatcacaaatcatttatctcttggtccacatctataatcatatatct 13028983  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 47551897 - 47551993
Alignment:
Q  305 tataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    |||||| ||||||||||||||||||| ||||| ||| |||||||||||||||| ||||||| |||||| || ||| |||||||| ||||||||||||    
T  47551897 tataatgtactaatagttgacattttaatcacatgaaccacacttatcacaaatcatttctttcttggcccgcacttatcatcaaatatctcaaact 47551993  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 13035747 - 13035656
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatat 393  Q
    ||||||||| ||  ||||||||||||||||| |||  ||||||||||||||||||| ||||| |||||||| |||||||||| |||||||||    
T  13035747 tagtataatgtaggaatagttgacattttgaccacaagacccacacttatcacaaatcatttatctcttggcccacacctataatcatatat 13035656  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 22087627 - 22087717
Alignment:
Q  308 aatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaa 398  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||| | ||||||||| ||||  ||||||||| || |||||||||||    
T  22087627 aatataccaatagttgacattttgaccacatgacccacacttatcacatatcatttctcttttggctcacacctataattatatatctcaa 22087717  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 384
Target Start/End: Complemental strand, 32946047 - 32946004
Alignment:
Q  341 cccacacttatcacaaaccatttctctcttggtccacacctatc 384  Q
    ||||||||||||||||||| |||||||||||||||| |||||||    
T  32946047 cccacacttatcacaaaccctttctctcttggtccaaacctatc 32946004  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 26333105 - 26333163
Alignment:
Q  343 cacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    |||||||| ||||||  ||||||||||||| |||||| ||| |||||||||||||||||    
T  26333105 cacacttaccacaaattatttctctcttggcccacacttattatcatatatctcaaact 26333163  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 46732873 - 46732782
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatat 393  Q
    ||||||||| ||| ||||||||||| || |||||| ||  ||||||||| || | | ||||| |||||| |  |||||||||||||||||||    
T  46732873 tagtataatgtaccaatagttgacaattagatcacatgctccacacttaccaaatatcatttttctcttcgctcacacctatcatcatatat 46732782  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 1902006 - 1902105
Alignment:
Q  300 aatagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    |||||||||||  |||||||||||| ||||||||||| || ||| ||||||||| ||| ||||||||| |||||| |||| |||||||||||||||||||    
T  1902006 aatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttggtctacacatatcatcatatatctcaaa 1902105  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 1911452 - 1911551
Alignment:
Q  300 aatagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    |||||||||||  |||||||||||| ||||||||||| || ||| ||||||||| ||| ||||||||| |||||| |||| |||||||||||||||||||    
T  1911452 aatagtataatgcactaatagttgatattttgatcacatggcccccacttatcataaatcatttctcttttggtctacacatatcatcatatatctcaaa 1911551  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 44441875 - 44441776
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    ||||||||| ||  ||||||||||||||||||||| ||   ||||||||||||||| ||||||||||||||  ||||| |||||||||||||||||||||    
T  44441875 tagtataatgtatcaatagttgacattttgatcacatggatcacacttatcacaaatcatttctctcttggcgcacacttatcatcatatatctcaaact 44441776  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 399
Target Start/End: Original strand, 35864077 - 35864172
Alignment:
Q  304 gtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||| ||||||||||||| ||||| | ||| |  ||| ||||||||||||| ||||||||| |||| | |||| |||||||||||||||||||    
T  35864077 gtataatgtactaatagttgatatttttaccacattgccctcacttatcacaaatcatttctcttttggcctacacatatcatcatatatctcaaa 35864172  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 399
Target Start/End: Complemental strand, 10480656 - 10480557
Alignment:
Q  300 aatagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||||||||   |||||||||||||||| ||| ||| |||||||||||||| | ||||| ||||||||   ||| |||| ||||||||| |||||    
T  10480656 aatagtataatatatctatagttgacattttgaccacatgatccacacttatcacatatcatttttctcttggcgtacatctatgatcatatatttcaaa 10480557  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 398
Target Start/End: Original strand, 7729708 - 7729760
Alignment:
Q  346 acttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaa 398  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||||| |||||    
T  7729708 acttatcacaaattatttctctcttgggccacacctatcatcatatagctcaa 7729760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 34962494 - 34962403
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatat 393  Q
    ||||||||||||  ||| ||||||| ||||||| | |||||||||||||||||  | ||||| |||||| | |||||  |||||||||||||    
T  34962494 tagtataatatatcaatggttgacaatttgatcgcatgacccacacttatcacgtatcatttttctcttcgcccacatgtatcatcatatat 34962403  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 21984156 - 21984253
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||||||  |||| |||| ||||| |   ||||||||||| |||| | ||| ||||||||||||||  ||||  |||||||||||||||||||    
T  21984156 tagtataatatatcaataattgatattttaacatcttgacccacatttattaaaaatcatttctctcttggctcacatatatcatcatatatctcaaa 21984253  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 46396444 - 46396543
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    ||||||||| ||  ||||||||||||||||||||| ||   ||||||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||    
T  46396444 tagtataatgtatcaatagttgacattttgatcacatggatcacacttatcagaaatcatttctctcttggcccacacttatcatcatatatctcaaact 46396543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 1282452 - 1282354
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    ||||||||| || ||||||||||||||| |||||| |||  ||||||||||||||| ||||||| |||||| |||||| | || ||||||||||||||||    
T  1282452 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaact 1282354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 1283483 - 1283385
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    ||||||||| || ||||||||||||||| |||||| |||  ||||||||||||||| ||||||| |||||| |||||| | || ||||||||||||||||    
T  1283483 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaact 1283385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 37245142 - 37245044
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctctt-ggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||||||  |||| |||||||||||||||| ||| |||||||||||| ||| |||||||||||| |  |||||  ||| |||||||||||||||    
T  37245142 tagtataatatatcaatatttgacattttgatcacatgatccacacttatcataaatcatttctctcttagccccacatatataatcatatatctcaaa 37245044  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 399
Target Start/End: Original strand, 21487318 - 21487397
Alignment:
Q  319 agttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    |||||| ||||||| ||| ||  |||||||| ||||||| ||||||||| ||||||||||| |||||||| ||||||||||    
T  21487318 agttgatattttgaccacatggtccacacttctcacaaatcatttctcttttggtccacacatatcatca-atatctcaaa 21487397  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 306 - 381
Target Start/End: Complemental strand, 30282616 - 30282541
Alignment:
Q  306 ataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacct 381  Q
    |||||||| |||||||||| |||||||  |  |||||||||| ||| ||| | |||||||||||||||||||||||    
T  30282616 ataatatattaatagttgatattttgactaaatgacccacacctataacacaacatttctctcttggtccacacct 30282541  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 19967223 - 19967283
Alignment:
Q  319 agttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacac 379  Q
    |||||||||||| | ||| || | ||||||||||||||| ||||| |||||||||||||||    
T  19967223 agttgacattttaaccacatggctcacacttatcacaaatcatttatctcttggtccacac 19967283  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 27850719 - 27850624
Alignment:
Q  304 gtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||||  ||||||| | ||||||| ||| ||  |||||||||||| |||  |||||||| |||| |||||| |||||| |||||| |||||    
T  27850719 gtataatatatcaatagtttatattttgaccacatgtaccacacttatcataaattatttctcttttggcccacacttatcattatatatatcaaa 27850624  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 42773473 - 42773376
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| ||| ||||||||| ||||||| ||| |  || || ||| | ||||| ||||||||| ||||  ||||| |||||||||||| ||||||    
T  42773473 tagtataatgtaccaatagttgatattttgaccacatagcctactcttcttacaaatcatttctcttttggcacacacatatcatcatataactcaaa 42773376  T

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Target: scaffold0245 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 8132 - 8034
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    ||||||||| || ||||||||||||||| |||||| |||  ||||||||||||||| ||||||| |||||| |||||| | || ||||||||||||||||    
T  8132 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaact 8034  T

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Target: scaffold0229 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 302 - 401
Target Start/End: Complemental strand, 8460 - 8362
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaact 401  Q
    ||||||||| || ||||||||||||||| |||||| |||  ||||||||||||||| ||||||| |||||| |||||| | || ||||||||||||||||    
T  8460 tagtataatgtattaatagttgacattt-gatcacatgaatcacacttatcacaaatcatttctatcttggcccacacttgtcgtcatatatctcaaact 8362  T

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Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 6822790 - 6822707
Alignment:
Q  316 aatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    |||| |||||||||||||||| | | ||||| |||||||||| ||||| |||||||  ||||| ||||||||||||||||||||    
T  6822790 aataattgacattttgatcacataatccacatttatcacaaatcatttttctcttgacccacatctatcatcatatatctcaaa 6822707  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 11769760 - 11769857
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| || |||||||| ||||||||||||  || ||||||||| ||||||| ||||||||| ||||  || |  |||||||||||||||||||    
T  11769760 tagtataatgtattaatagttaacattttgatcatatggcccacacttctcacaaatcatttctcttttggctcaaatatatcatcatatatctcaaa 11769857  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 33106707 - 33106804
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| ||  ||||||||||||||||| ||  |||  |||||||||||||||  ||||||||||||| | |||| |||  |||||||| |||||    
T  33106707 tagtataatgtatcaatagttgacattttgaccatatgattcacacttatcacaaattatttctctcttggcctacacatatagtcatatatatcaaa 33106804  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 370
Target Start/End: Original strand, 46232377 - 46232435
Alignment:
Q  312 tactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctctt 370  Q
    |||||||||||||||||||||  || |||||||||||||||||||| ||||||||||||    
T  46232377 tactaatagttgacattttgactacatgacccacacttatcacaaatcatttctctctt 46232435  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 23756472 - 23756569
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| ||| ||  |||||||||||||| |  || ||||||||||  ||||| ||||||||| ||||  | |||||||||||||||||||||||    
T  23756472 tagtataatgtaccaaccgttgacattttgatgagatggcccacacttaatacaaatcatttctcttttggcacgcacctatcatcatatatctcaaa 23756569  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 4930861 - 4930779
Alignment:
Q  316 aatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| ||||||| ||| ||||| |||||| ||||||| ||||||| ||||||||||||| ||||| ||| |||||||||    
T  4930861 aatagttgagattttgaccacatgacctacacttctcacaaatcatttctttcttggtccacacatatca-catgtatctcaaa 4930779  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 22399343 - 22399404
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccattt 363  Q
    ||||||||||||  ||||||||||||||||||||| ||  | ||||||||||||||| ||||    
T  22399343 tagtataatatatcaatagttgacattttgatcacatggactacacttatcacaaacaattt 22399404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 29368766 - 29368669
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||||||  |||| |||| ||||| |   ||||||||||| |||| | ||| ||||||||||||||  ||||  |||||||||||||||||||    
T  29368766 tagtataatatatcaataattgatattttaacatcttgacccacatttattaaaaatcatttctctcttggctcacatatatcatcatatatctcaaa 29368669  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 15727146 - 15727049
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| ||  ||||||||||||||||||||   || ||||| ||||||||||  |||| | | |||| |||||  ||| |||||||||||||||    
T  15727146 tagtataatgtatcaatagttgacattttgatcatacgatccacatttatcacaaattatttgtattttggcccacatatataatcatatatctcaaa 15727049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Complemental strand, 15810991 - 15810894
Alignment:
Q  302 tagtataatatactaatagttgacattttgatcacttgacccacacttatcacaaaccatttctctcttggtccacacctatcatcatatatctcaaa 399  Q
    ||||||||| ||  ||||||| ||||||||| |||  |  | ||||||||||||||  |||| ||| |||| |||||  |||||||||||||||||||    
T  15810991 tagtataatgtatcaatagttcacattttgaccacacggtctacacttatcacaaattatttttcttttggcccacatatatcatcatatatctcaaa 15810894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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