View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_low_19 (Length: 414)
Name: NF1389_low_19
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 117 - 385
Target Start/End: Original strand, 27698022 - 27698290
Alignment:
| Q |
117 |
tttctaattttaattcaaaatgtgccctatgataagattttgtaagacaatgcaactttactattaacatttagtagtacatttctttctggtgtgggtg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27698022 |
tttctaattttaattcaaaatgtgccctatgataagattttgtaagacaatgcaactttaccattaacatttagtagtacatttctttctggtgtgggtg |
27698121 |
T |
|
| Q |
217 |
tgaaaatggtctaaactctaaacagttattcggtcaaagtgtccaatttaattgttggcaagcaaactgtagagataaaacaacatctgtatagcttgac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27698122 |
tgaaaatggtctaaactctaaacagttattcggtcaaagtgtccaatttaattattggcaagcaaactgtggagataaaacaacatctgtatagcttgac |
27698221 |
T |
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| Q |
317 |
agagcaataactgtgaaaaaatttcaaaaacacaaatattttaataaccaattgtaaaatagaccaaag |
385 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27698222 |
agagcaataactgtgaaaaaatttcagaaacacaaatattttaataaccaattgtaaaatagaacaaag |
27698290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 45327212 - 45327103
Alignment:
| Q |
13 |
aatatgatattataattaagttgattgccccttaagattattagttaattacaagttgctataaacatctgtggcttttgtaaagcatttatcactaatc |
112 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45327212 |
aatatgatattctaattaagttgattgccccttaagattattagttaattacaagttgctataaacatctgtggcttttgtaaagcatttgtcactaatc |
45327113 |
T |
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| Q |
113 |
atgatttcta |
122 |
Q |
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|||||||||| |
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| T |
45327112 |
atgatttcta |
45327103 |
T |
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