View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1389_low_28 (Length: 286)

Name: NF1389_low_28
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1389_low_28
NF1389_low_28
[»] chr3 (9 HSPs)
chr3 (1-286)||(49445242-49445527)
chr3 (135-197)||(49426476-49426538)
chr3 (137-191)||(49416040-49416094)
chr3 (43-191)||(43359917-43360065)
chr3 (134-184)||(43362339-43362389)
chr3 (154-196)||(49437825-49437867)
chr3 (47-104)||(8312222-8312279)
chr3 (47-112)||(8316678-8316743)
chr3 (135-196)||(49432718-49432779)
[»] chr7 (5 HSPs)
chr7 (155-196)||(12635966-12636007)
chr7 (134-195)||(1333159-1333220)
chr7 (149-197)||(11378461-11378509)
chr7 (135-197)||(32247164-32247226)
chr7 (149-197)||(11375285-11375333)
[»] chr2 (3 HSPs)
chr2 (47-112)||(1019176-1019241)
chr2 (47-105)||(989595-989653)
chr2 (47-104)||(1024755-1024812)
[»] chr1 (2 HSPs)
chr1 (135-196)||(1965595-1965656)
chr1 (159-196)||(41662531-41662568)
[»] scaffold0244 (1 HSPs)
scaffold0244 (135-191)||(5720-5776)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 49445527 - 49445242
Alignment:
Q  1 tcattattaataggccaccgaagattgtattatacctgatgtccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttaga 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445527 tcattattaataggccaccgaagattgtatgatacctgatgtccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttaga 49445428  T
Q  101 acttgtactcttttgaggttcaaaggcctgcatggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatcactg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445427 acttgtactcttttgaggttcaaaggcctgcatggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatcactg 49445328  T
Q  201 gaccttcgccttgtgattatcttcttcctcccgggcccatgctacatgtcgattttcagtatattgaaagagaattatcctcgttc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445327 gaccttcgccttgtgattatcttcttcctcccgggcccatgctacatgtcgattttcagtatattgaaagagaattatcctcgttc 49445242  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 49426538 - 49426476
Alignment:
Q  135 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 197  Q
    ||||||||||  |||||||| ||||| | |||||||||||||||||||||||||||| |||||    
T  49426538 gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca 49426476  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 49416040 - 49416094
Alignment:
Q  137 gagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 191  Q
    ||||||||  |||||| ||| |||||||||||||| |||||||||||||||||||    
T  49416040 gagcttctattggcaagatacattttgaagaatgctagagttttgcaaaccatga 49416094  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 43359917 - 43360065
Alignment:
Q  43 ccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtgagctt 142  Q
    ||||||||||||||| ||||| |  | |||||| |  |||||||||||| |||||| |||||| || |||| |   |||| |||||  ||||||||| ||    
T  43359917 ccaggaaaattgggtagaccctgcatctgttccgcggtgcatttcattacaccttaaaacttgcacactttggtacttcagaggccaacatggtgaggtt 43360016  T
Q  143 ctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 191  Q
    | | | |||| ||| ||| | || |||||||||||||||||||| ||||    
T  43360017 cagttagcaacatacattcttaataatgcaagagttttgcaaactatga 43360065  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 43362339 - 43362389
Alignment:
Q  134 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaa 184  Q
    ||||||||| |  |||||| ||||||| |||||||||||||||||||||||    
T  43362339 ggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgcaa 43362389  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 49437867 - 49437825
Alignment:
Q  154 atatattttgaagaatgcaagagttttgcaaaccatgacaatc 196  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||    
T  49437867 atatattctgaagaatgcaagagttttgcaaacaatgtcaatc 49437825  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 8312222 - 8312279
Alignment:
Q  47 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 104  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  8312222 gaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaactt 8312279  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 8316678 - 8316743
Alignment:
Q  47 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 112  Q
    ||||||||||| || ||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  8316678 gaaaattgggtggaaccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 8316743  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 49432779 - 49432718
Alignment:
Q  135 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 196  Q
    ||||||||||  |||||| ||||||| | |||||| ||||||||||| ||||||||| ||||    
T  49432779 gtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatc 49432718  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 12635966 - 12636007
Alignment:
Q  155 tatattttgaagaatgcaagagttttgcaaaccatgacaatc 196  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  12635966 tatattttgaagaatgcaagagttttacaaaccatgacaatc 12636007  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 1333220 - 1333159
Alignment:
Q  134 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaat 195  Q
    |||||||||||| | ||||  ||||| ||||||||||| |||||||| ||||||||||||||    
T  1333220 ggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat 1333159  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 11378461 - 11378509
Alignment:
Q  149 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 197  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||||||    
T  11378461 gcaaaatatattttgaagaatgcaaaagtattgcagacaatgacaatca 11378509  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 32247164 - 32247226
Alignment:
Q  135 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 197  Q
    |||||||| || | ||||||||||||||||||||||||||| | || |||| ||||| |||||    
T  32247164 gtgagcttatgttagcaaaatatattttgaagaatgcaagaatgttacaaatcatgaaaatca 32247226  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 11375285 - 11375333
Alignment:
Q  149 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 197  Q
    ||||| ||||||||||||||||||| ||| ||||| | |||||||||||    
T  11375285 gcaaagtatattttgaagaatgcaaaagtattgcagatcatgacaatca 11375333  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 1019241 - 1019176
Alignment:
Q  47 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 112  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  1019241 gaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 1019176  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 989653 - 989595
Alignment:
Q  47 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttg 105  Q
    ||||||||||| || ||||| ||||||||||| ||| |||||| | |||||||||||||    
T  989653 gaaaattgggtggaaccagaatttgttccacaatgcctttcatcataccttagaacttg 989595  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 1024812 - 1024755
Alignment:
Q  47 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 104  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  1024812 gaaaattgggtggacccagaatttgttccacaatgctttttatcacaccttagaactt 1024755  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 1965595 - 1965656
Alignment:
Q  135 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 196  Q
    ||||||||||  |||||| ||||||| | |||||| ||| ||||||||||||||||| ||||    
T  1965595 gtgagcttcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatc 1965656  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 41662568 - 41662531
Alignment:
Q  159 ttttgaagaatgcaagagttttgcaaaccatgacaatc 196  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  41662568 ttttgaagaatgcaagagttttacaaaccatgaaaatc 41662531  T

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Target: scaffold0244 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 191
Target Start/End: Complemental strand, 5776 - 5720
Alignment:
Q  135 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 191  Q
    ||||||||| | | ||||||||||||||||||||| ||||| ||||  |||||||||    
T  5776 gtgagcttcagttagcaaaatatattttgaagaattcaagaattttagaaaccatga 5720  T

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