View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_low_31 (Length: 264)
Name: NF1389_low_31
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 35492081 - 35492299
Alignment:
| Q |
17 |
ccttgccacatgggaaaagcatcagccagccaacaccaatggaagtagtgcagagcaaaatcttcaactatggttgatcattttttatcggcagagcctg |
116 |
Q |
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| T |
35492081 |
ccttgtcacatgggaaaagcatcagccagccaacaccaatgaaagtagtgcagagcaaa-tcttcaactgtggttgatcattttttatcggcagagcttg |
35492179 |
T |
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| Q |
117 |
gcttccgggcctgtcgggagt-ttga--atgtaataacttggaactactttggcctaggaaacgtcaaggcagttccctgtat-aaataccttgtctgtg |
212 |
Q |
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||| ||||||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35492180 |
gctcccgggcctgtcgggagtcatgaatatgtaatagcttggaactattttggcctaggaaacgtcaaggcagttccctgtataaaataccttgtctgtg |
35492279 |
T |
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| Q |
213 |
tctatacacctgacattgtt |
232 |
Q |
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|||||||||||||||||||| |
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| T |
35492280 |
tctatacacctgacattgtt |
35492299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 35609631 - 35609771
Alignment:
| Q |
97 |
ttttttatcggcagagcctggcttccgggcctgtcgggagt-ttgaatgtaataacttggaactactttggcctaggaaacgtcaaggcagttccctgta |
195 |
Q |
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| T |
35609631 |
ttttttatcggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcgtggcctaggcaatgtcaaggcagttccctgta |
35609730 |
T |
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| Q |
196 |
t-aaataccttgtctgtgtctatacacctgacattgttatc |
235 |
Q |
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| T |
35609731 |
tcaaagacctcgtccgtgtctataaaccggacattgttatc |
35609771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 235
Target Start/End: Complemental strand, 4021177 - 4021037
Alignment:
| Q |
97 |
ttttttatcggcagagcctggcttccgggcctgtcgggagtt-tgaatgtaataacttggaactactttggcctaggaaacgtcaaggcagttccctgta |
195 |
Q |
| |
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|||||||||||||| |||||||| || |||||| ||||||| ||||||| ||| ||||||||| ||||||||| || ||||||||||||||||||| |
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| T |
4021177 |
ttttttatcggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcgtggcctaggcaatgtcaaggcagttccctgta |
4021078 |
T |
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| Q |
196 |
t-aaataccttgtctgtgtctatacacctgacattgttatc |
235 |
Q |
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| ||| |||| ||| ||||||||| ||| |||||||||||| |
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| T |
4021077 |
tcaaagacctcgtccgtgtctataaaccggacattgttatc |
4021037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 234
Target Start/End: Original strand, 21948486 - 21948625
Alignment:
| Q |
97 |
ttttttatcggcagagcctggcttccgggcctgtcgggagtt-tgaatgtaataacttggaactactttggcctaggaaacgtcaaggcagttccctgta |
195 |
Q |
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|||||||| ||||| |||||||| || |||||| ||||||| ||||||| ||| ||||||||| |||||||| || ||||||||||||||||||| |
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| T |
21948486 |
ttttttattggcagcgcctggctcccaggcctgccgggagtcatgaatgttatagcttggaactgtcggggcctaggcaatgtcaaggcagttccctgta |
21948585 |
T |
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| Q |
196 |
t-aaataccttgtctgtgtctatacacctgacattgttat |
234 |
Q |
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| ||| |||| ||| ||||||||| ||| |||||| |||| |
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| T |
21948586 |
tcaaagacctcgtccgtgtctataaaccggacattcttat |
21948625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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