View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_low_38 (Length: 251)
Name: NF1389_low_38
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 37263821 - 37263621
Alignment:
| Q |
22 |
tccgatactccaatcttaaatataaacaaaagtcaagaatgtacttgatttaaatttagactaaatacattttgactattaccccggaccaaataaattt |
121 |
Q |
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| T |
37263821 |
tccgatactccaatcttaaatataaacaaaagtcaagaatgtacttgatttaaatttagattaaatacattttgactattaccccggaccaaataaattt |
37263722 |
T |
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| Q |
122 |
tgacttttgtatcaagtgccgaggtacctagaaacgcagataattttaccatgcttgtagtttaaaaatcgcatttggctgtgattcttcatgtatatta |
221 |
Q |
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| T |
37263721 |
tgacttttgtatcaagtgccgagatacctagacacgcagataattgtaccatgcttgtagtttaaaaatcgcatttggctgtgattcttcatatatatta |
37263622 |
T |
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| Q |
222 |
a |
222 |
Q |
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| T |
37263621 |
a |
37263621 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 36268903 - 36268959
Alignment:
| Q |
39 |
aaatataaacaaaagtcaagaatgtacttgatttaaatttagactaaatacattttga |
96 |
Q |
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|||||||| |||||||||| |||||| ||| | ||||||| ||||||||||||||||| |
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| T |
36268903 |
aaatataaccaaaagtcaa-aatgtatttggtgtaaatttggactaaatacattttga |
36268959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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