View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1389_low_42 (Length: 250)

Name: NF1389_low_42
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1389_low_42
NF1389_low_42
[»] chr4 (6 HSPs)
chr4 (130-240)||(43994142-43994252)
chr4 (1-37)||(3146315-3146351)
chr4 (1-37)||(26497400-26497436)
chr4 (1-37)||(36665833-36665869)
chr4 (1-37)||(49316184-49316220)
chr4 (1-37)||(49965243-49965279)
[»] chr5 (7 HSPs)
chr5 (1-37)||(21119205-21119241)
chr5 (1-37)||(670894-670930)
chr5 (1-37)||(2849094-2849130)
chr5 (1-37)||(10646921-10646957)
chr5 (1-37)||(15295986-15296022)
chr5 (1-37)||(30985448-30985484)
chr5 (1-37)||(35858292-35858328)
[»] scaffold0365 (1 HSPs)
scaffold0365 (1-37)||(310-346)
[»] chr8 (7 HSPs)
chr8 (1-37)||(23615997-23616033)
chr8 (1-37)||(30591665-30591701)
chr8 (1-37)||(30886799-30886835)
chr8 (1-37)||(34852995-34853031)
chr8 (3-33)||(11910495-11910525)
chr8 (3-33)||(11941132-11941162)
chr8 (1-37)||(4594798-4594834)
[»] chr7 (4 HSPs)
chr7 (1-37)||(522864-522900)
chr7 (1-37)||(32813351-32813387)
chr7 (1-37)||(37467802-37467838)
chr7 (1-37)||(45300917-45300953)
[»] chr6 (8 HSPs)
chr6 (1-37)||(5059426-5059462)
chr6 (1-37)||(10839887-10839923)
chr6 (1-37)||(21761344-21761380)
chr6 (1-37)||(25085910-25085946)
chr6 (1-37)||(29918650-29918686)
chr6 (1-37)||(30599298-30599334)
chr6 (1-37)||(34782677-34782713)
chr6 (3-37)||(2525449-2525483)
[»] chr3 (7 HSPs)
chr3 (1-37)||(14471-14507)
chr3 (1-37)||(19286620-19286656)
chr3 (1-37)||(21912516-21912552)
chr3 (1-37)||(33050181-33050217)
chr3 (1-37)||(41949905-41949941)
chr3 (1-37)||(50901331-50901367)
chr3 (1-35)||(40997584-40997618)
[»] chr2 (7 HSPs)
chr2 (1-37)||(11709771-11709807)
chr2 (1-37)||(12371403-12371439)
chr2 (1-37)||(35467198-35467234)
chr2 (1-37)||(35852295-35852331)
chr2 (1-37)||(37425812-37425848)
chr2 (1-37)||(42453700-42453736)
chr2 (1-37)||(9305230-9305266)
[»] chr1 (3 HSPs)
chr1 (1-37)||(14544576-14544612)
chr1 (1-33)||(43055874-43055906)
chr1 (1-37)||(50581119-50581155)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 43994142 - 43994252
Alignment:
Q  130 taaatagaaattttcagaaaaccctacttccgttttttccaccaccgcgatcataagcttacgctgccaaggtgagtcttctccaaccatatcccacatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43994142 taaatagaaattttcagaaaaccctacttccgttttttccaccaccgcgatcataagcttacgctgccaaggtgagtcttctccaaccatatcccacatt 43994241  T
Q  230 gttctcctttg 240  Q
    |||||||||||    
T  43994242 gttctcctttg 43994252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3146351 - 3146315
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  3146351 ccccttgtgaaccaaacacacttttaattaaaaatat 3146315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26497400 - 26497436
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26497400 ccccttgtgaaccaaacacacttttaattaaaaatat 26497436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36665869 - 36665833
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  36665869 ccccttgtgaaccaaacacacttttaattaaaaatat 36665833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49316220 - 49316184
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49316220 ccccttgtgaaccaaacacacttttaattaaaaatat 49316184  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49965279 - 49965243
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  49965279 ccccttgtgaaccaaacacacttttaattaaaaatat 49965243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21119241 - 21119205
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  21119241 ccccttgtgaatcaaacacacttttaattaaaaatat 21119205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 670894 - 670930
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  670894 ccccttgtgaaccaaacacacttttaattaaaaatat 670930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2849130 - 2849094
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  2849130 ccccttgtgaaccaaacacacttttaattaaaaatat 2849094  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10646921 - 10646957
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10646921 ccccttgtgaaccaaacacacttttaattaaaaatat 10646957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15295986 - 15296022
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  15295986 ccccttgtgaaccaaacacacttttaattaaaaatat 15296022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30985448 - 30985484
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30985448 ccccttgtgaaccaaacacacttttaattaaaaatat 30985484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35858328 - 35858292
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35858328 ccccttgtgaaccaaacacacttttaattaaaaatat 35858292  T

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Target: scaffold0365 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 346 - 310
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  346 ccccttgtgaaccaaacacacttttaattaaaaatat 310  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23615997 - 23616033
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  23615997 ccccttgtgaaccaaacacacttttaattaaaaatat 23616033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30591665 - 30591701
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30591665 ccccttgtgaaccaaacacacttttaattaaaaatat 30591701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30886835 - 30886799
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30886835 ccccttgtgaaccaaacacacttttaattaaaaatat 30886799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34852995 - 34853031
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34852995 ccccttgtgaaccaaacacacttttaattaaaaatat 34853031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 11910495 - 11910525
Alignment:
Q  3 ccttgtgaatcaaacacacttttaattaaaa 33  Q
    |||||||||||||||||||||||||||||||    
T  11910495 ccttgtgaatcaaacacacttttaattaaaa 11910525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 11941162 - 11941132
Alignment:
Q  3 ccttgtgaatcaaacacacttttaattaaaa 33  Q
    |||||||||||||||||||||||||||||||    
T  11941162 ccttgtgaatcaaacacacttttaattaaaa 11941132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4594834 - 4594798
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  4594834 ccccttgtgaaccaaagacacttttaattaaaaatat 4594798  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 522864 - 522900
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  522864 ccccttgtgaaccaaacacacttttaattaaaaatat 522900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32813351 - 32813387
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  32813351 ccccttgtgaaccaaacacacttttaattaaaaatat 32813387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37467838 - 37467802
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37467838 ccccttgtgaaccaaacacacttttaattaaaaatat 37467802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 45300917 - 45300953
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  45300917 ccccttgtgaaccaaacacacttttaattaaaaatat 45300953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5059462 - 5059426
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  5059462 ccccttgtgaaccaaacacacttttaattaaaaatat 5059426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10839887 - 10839923
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  10839887 ccccttgtgaaccaaacacacttttaattaaaaatat 10839923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21761344 - 21761380
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  21761344 ccccttgtgaaccaaacacacttttaattaaaaatat 21761380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25085946 - 25085910
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25085946 ccccttgtgaaccaaacacacttttaattaaaaatat 25085910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29918686 - 29918650
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  29918686 ccccttgtgaaccaaacacacttttaattaaaaatat 29918650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30599298 - 30599334
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  30599298 ccccttgtgaaccaaacacacttttaattaaaaatat 30599334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34782713 - 34782677
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  34782713 ccccttgtgaaccaaacacacttttaattaaaaatat 34782677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 2525449 - 2525483
Alignment:
Q  3 ccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||| |||||||||||||||||||||||||    
T  2525449 ccttgtgaaccaaacacacttttaattaaaaatat 2525483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14507 - 14471
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14507 ccccttgtgaaccaaacacacttttaattaaaaatat 14471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19286620 - 19286656
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  19286620 ccccttgtgaaccaaacacacttttaattaaaaatat 19286656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21912552 - 21912516
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  21912552 ccccttgtgaaccaaacacacttttaattaaaaatat 21912516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33050181 - 33050217
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33050181 ccccttgtgaaccaaacacacttttaattaaaaatat 33050217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41949941 - 41949905
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  41949941 ccccttgtgaaccaaacacacttttaattaaaaatat 41949905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50901367 - 50901331
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  50901367 ccccttgtgaaccaaacacacttttaattaaaaatat 50901331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 40997584 - 40997618
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaat 35  Q
    ||||||||||| |||||||||||||||||||||||    
T  40997584 ccccttgtgaaccaaacacacttttaattaaaaat 40997618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11709771 - 11709807
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  11709771 ccccttgtgaaccaaacacacttttaattaaaaatat 11709807  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12371439 - 12371403
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12371439 ccccttgtgaaccaaacacacttttaattaaaaatat 12371403  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35467198 - 35467234
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35467198 ccccttgtgaaccaaacacacttttaattaaaaatat 35467234  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35852331 - 35852295
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  35852331 ccccttgtgaaccaaacacacttttaattaaaaatat 35852295  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37425848 - 37425812
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37425848 ccccttgtgaaccaaacacacttttaattaaaaatat 37425812  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42453700 - 42453736
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  42453700 ccccttgtgaaccaaacacacttttaattaaaaatat 42453736  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9305230 - 9305266
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    |||| |||||| |||||||||||||||||||||||||    
T  9305230 ccccatgtgaaccaaacacacttttaattaaaaatat 9305266  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14544576 - 14544612
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  14544576 ccccttgtgaaccaaacacacttttaattaaaaatat 14544612  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 43055874 - 43055906
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaa 33  Q
    ||||||||||| |||||||||||||||||||||    
T  43055874 ccccttgtgaaccaaacacacttttaattaaaa 43055906  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50581119 - 50581155
Alignment:
Q  1 ccccttgtgaatcaaacacacttttaattaaaaatat 37  Q
    |||| |||||| |||||||||||||||||||||||||    
T  50581119 ccccctgtgaaccaaacacacttttaattaaaaatat 50581155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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