View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1389_low_6 (Length: 603)
Name: NF1389_low_6
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1389_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 228 - 575
Target Start/End: Original strand, 37596862 - 37597208
Alignment:
| Q |
228 |
attacttctccaaaaaaggaaattcctacaattggattctgaaaagatgcatatgccattaaattgcttaactcttcaaatattttagaaatattttgat |
327 |
Q |
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| T |
37596862 |
attacttctccaaaaaaggaaattcctacaattggattctgaaaagatgcatatgccattaaattgcttaactcttcaaatattttagaaatattttgat |
37596961 |
T |
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| Q |
328 |
cctcaacatatagatggaaatcaatttagtccctaaatttgcttatcttatttatgaacaaccaaattgatgtctaaaatcttctaagcatagtaacatg |
427 |
Q |
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| T |
37596962 |
cctcaacatatagatggaaatcaatttagtccctaaatttgcttatcttatttatgaacaaccaaattgatgtctaaaatcttctaagcatacagacatg |
37597061 |
T |
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| Q |
428 |
ggcttaattaattttgtgacaaggtataatcagatcagataatatcaagcattaaaatttcatctcatttgccaaacagtttctcgagctttagtgcata |
527 |
Q |
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| T |
37597062 |
ggc----ttaattttgtgacaaggtataatcagatcagataatatcaagcattaaaatttcatctcatttgccaaacagtttctcgagctttagtgcata |
37597157 |
T |
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| Q |
528 |
gtttgaaatcataggt---ataacgaaattaagatgacatcatgattttgt |
575 |
Q |
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| T |
37597158 |
gtttgaaatcataggtttaataacgaaattaagatgacatcatgattttgt |
37597208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 37596691 - 37596841
Alignment:
| Q |
78 |
tgaaattatttcttttttatttcttactttatgtgtttagttaactgagaaagtataatatgatttttccttttcacatttcaacttatatggaggaaaa |
177 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596691 |
tgaaattatttcttttttatttcttactttatgt--ttagttaactgagaaagtataatatgatttttccttttcacatttcaacttatatggaggaaaa |
37596788 |
T |
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| Q |
178 |
aattgctttgnnnnnnngaagtttccaagtttttaaaaagaatatcagttatt |
230 |
Q |
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| T |
37596789 |
aattgctttgtttttttgaagtttccaagtttttaaaaagaatatcagttatt |
37596841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 37596658 - 37596708
Alignment:
| Q |
10 |
aagaatatgtcaaatcataagtaagctgatcaatgaaattatttctttttt |
60 |
Q |
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| T |
37596658 |
aagaatatgtcaaatcataagtaagctgatcaatgaaattatttctttttt |
37596708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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