View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1389_low_8 (Length: 581)

Name: NF1389_low_8
Description: NF1389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1389_low_8
NF1389_low_8
[»] chr1 (1 HSPs)
chr1 (13-552)||(31442639-31443178)
[»] scaffold0064 (1 HSPs)
scaffold0064 (120-459)||(24161-24494)
[»] chr7 (22 HSPs)
chr7 (146-421)||(13887889-13888170)
chr7 (129-248)||(7310973-7311092)
chr7 (129-248)||(7328366-7328485)
chr7 (343-445)||(35205922-35206024)
chr7 (120-245)||(35205655-35205780)
chr7 (136-248)||(20415058-20415170)
chr7 (157-248)||(7306449-7306540)
chr7 (343-437)||(21210479-21210573)
chr7 (354-420)||(20414877-20414943)
chr7 (379-435)||(7328158-7328214)
chr7 (136-248)||(20456681-20456793)
chr7 (373-420)||(20456500-20456547)
chr7 (346-445)||(21218709-21218808)
chr7 (127-213)||(21218472-21218558)
chr7 (343-422)||(29921991-29922070)
chr7 (340-414)||(660842-660916)
chr7 (382-416)||(7311247-7311281)
chr7 (343-421)||(36260247-36260325)
chr7 (373-446)||(9807793-9807866)
chr7 (349-422)||(22028621-22028694)
chr7 (215-251)||(20352274-20352310)
chr7 (345-421)||(36263047-36263123)
[»] chr5 (4 HSPs)
chr5 (127-213)||(42298331-42298417)
chr5 (343-420)||(28763903-28763980)
chr5 (343-416)||(42298110-42298183)
chr5 (216-248)||(18964671-18964703)
[»] chr4 (7 HSPs)
chr4 (127-248)||(2911254-2911375)
chr4 (342-422)||(3560955-3561035)
chr4 (349-415)||(53790553-53790619)
chr4 (342-421)||(3565738-3565817)
chr4 (343-433)||(53774822-53774912)
chr4 (342-422)||(3557719-3557799)
chr4 (343-415)||(35767018-35767090)
[»] scaffold0128 (2 HSPs)
scaffold0128 (343-443)||(4109-4209)
scaffold0128 (127-213)||(4357-4443)
[»] chr2 (4 HSPs)
chr2 (354-472)||(43001448-43001566)
chr2 (128-173)||(20712292-20712337)
chr2 (349-422)||(18908813-18908886)
chr2 (349-422)||(18920769-18920842)
[»] scaffold0097 (1 HSPs)
scaffold0097 (128-173)||(16131-16176)
[»] chr6 (1 HSPs)
chr6 (216-246)||(17369860-17369890)


Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 13 - 552
Target Start/End: Original strand, 31442639 - 31443178
Alignment:
Q  13 aatatgcttaaaatatacttacataaatgagtactagacaagaaattcaagacaggcagttgattcattgtatctataacaaagttttgaaataaaagaa 112  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  31442639 aatatgcttaaaatatacttacatgaatgagtaatagacaagaaattcaagacaggcagttgattcattgtatctataacaaagttttgaagtaaaggaa 31442738  T
Q  113 ataatggctagagcagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagtttt 212  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31442739 aaaatggctagagaagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagtttt 31442838  T
Q  213 cactactctattatttctccaattatagagaattgcccgttctttctggtcatctacaaatacgagtgtatcaccattcacataaagattgaacattgag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31442839 cactactctattatttctccaattatagagaattgcccgttctttctggtcatctacaaatacgagtgtatcaccattcacataaagattgaacattgag 31442938  T
Q  313 ataccaggtttcaagttcatcttaagcttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaa 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31442939 ataccaggtttcaagttcatcttaagcttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacga 31443038  T
Q  413 aatcggtttcattcaaatcatgatagaaacaaagtgaatccattaacatagaaacacctggctttgcatgtgacaccttctgtaaaacatgtgacaagtc 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31443039 aatcggtttcattcaaatcatgatagaaacaaagtgaatccattaacatagaaacacctggctttgcatgtgacaccttctgtaaaacatgtgacaagtc 31443138  T
Q  513 cagagaaattggaggtggcagaaattgtgtgtatgtctct 552  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31443139 cagagaaattggaggtggcagaaattgtgtgtatgtctct 31443178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 120 - 459
Target Start/End: Complemental strand, 24494 - 24161
Alignment:
Q  120 ctagagcagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactact 219  Q
    |||||| |||||||||| |||||  |||| ||||| |||||| ||||||| |||||||||  |||||||||||||||||||||| |||||||||||||||    
T  24494 ctagagaagaacttactctcaacaagttggaaccatgctttcaacataattgtttatagatcaccaacatatctttttgttaaccctagttttcactact 24395  T
Q  220 ctattatttctccaattatagagaattgcccgttctttctggtcatctacaaatacgagtgtatcaccattcacataaagattgaacattgagat-acca 318  Q
    ||||||||| ||||||||||||||||||| || | ||  ||||  |     ||||| | ||||||||||||| ||||       || |||||||| ||||    
T  24394 ctattatttatccaattatagagaattgctcggttttgttggttgtgagtgaataccattgtatcaccattctcata-------aatattgagatgacca 24302  T
Q  319 ggtttcaagttcatcttaagcttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcgg 418  Q
     |||| | |||||| | ||| |  |||||||||| |||||| |||||||  || ||||||||||||||| ||| |||||||||||||||||||||| | |    
T  24301 cgtttaatgttcatttgaagatcgtgatagctaaatttaaggaattgagttcaagacttttcatctccatattctgtcatcttccatataacaaaaccag 24202  T
Q  419 tttcattcaaatcatgatagaaacaaagtgaatccattaac 459  Q
    || |    || |||||||| |||||||| |||| |||||||    
T  24201 ttcccccgaattcatgataaaaacaaagggaattcattaac 24161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 146 - 421
Target Start/End: Original strand, 13887889 - 13888170
Alignment:
Q  146 ttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaact---ctagttttcactactctattatttctccaattatagag 242  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| | |||||  |||   ||||||||| |||| | ||||||||||||||| ||||     
T  13887889 ttgaaaccaagctttcgacataattgtttatagagaaccaacgtatttctttgtgtactgatctagttttcgctacccgattatttctccaattgtagaa 13887988  T
Q  243 aattgcccgttctttctggtcatc---tacaaatacgagtgtatcaccattcacataaagattgaacattgagataccaggtttcaagttcatcttaagc 339  Q
    |||||| || | |||| |||| ||   | | ||||| | |||| || ||||| ||||||| |||||    |||| ||||||||| |||||||||||||      
T  13887989 aattgctcggtttttcaggtcgtcgtgtgcgaataccaatgtaccatcattctcataaaggttgaaacacgagaaaccaggtttgaagttcatcttaaaa 13888088  T
Q  340 ttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 421  Q
    ||  ||||||||| |||||| ||||||| ||| |||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  13888089 ttgcgatagctaaatttaaggaattgagtccaagacttttcgtctccaaattttgtcattttccatataacaaaattggttt 13888170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 7310973 - 7311092
Alignment:
Q  129 aacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattattt 228  Q
    |||||||||||||   ||||||||||  |||||||||||||  || |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||    
T  7310973 aacttactttcaataggttgaaaccagactttcgacataatccttgatagagaaccaacatatctttttgttaactctagatttcagtactctattagtt 7311072  T
Q  229 ctccaattatagagaattgc 248  Q
    ||| | ||||| ||||||||    
T  7311073 ctcaagttatacagaattgc 7311092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 7328485 - 7328366
Alignment:
Q  129 aacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattattt 228  Q
    |||||||||||| |  ||||||||||  |||||||||||||  || |||||| ||||||||||||||||||||||||||| || || |||||||||| ||    
T  7328485 aacttactttcagcaggttgaaaccagactttcgacataatccttgatagagtaccaacatatctttttgttaactctagattccagtactctattagtt 7328386  T
Q  229 ctccaattatagagaattgc 248  Q
    ||| | ||||||||||||||    
T  7328385 ctcaagttatagagaattgc 7328366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 343 - 445
Target Start/End: Original strand, 35205922 - 35206024
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaac 442  Q
    |||||||||| |||||| ||||||| ||| ||||| |||| |||||||| |||||||||||||||||||||||| ||| |||| ||||||||||| ||||    
T  35205922 tgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaaaac 35206021  T
Q  443 aaa 445  Q
    |||    
T  35206022 aaa 35206024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 35205655 - 35205780
Alignment:
Q  120 ctagagcagaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactact 219  Q
    |||||| | ||||||| ||||||| |||||||||| ||||||||||||||  || |||| ||||||||||||||| ||||||| |  || ||||| ||||    
T  35205655 ctagagaacaacttacattcaactagttgaaaccaggctttcgacataatccttgatagtgaaccaacatatcttattgttaattgaagatttcagtact 35205754  T
Q  220 ctattatttctccaattatagagaat 245  Q
    |||||  ||||||| |||||||||||    
T  35205755 ctattggttctccagttatagagaat 35205780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 20415170 - 20415058
Alignment:
Q  136 tttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattatttctccaat 235  Q
    |||||||  ||||||||||  ||||| ||||||  ||| ||||||||||||||| | || ||||||||||| | ||||| |||| |||||||||||||||    
T  20415170 tttcaacaagttgaaaccagactttcaacataacagttgatagagaaccaacatttgttattgttaactctgggtttcaatactatattatttctccaat 20415071  T
Q  236 tatagagaattgc 248  Q
    |||||||||||||    
T  20415070 tatagagaattgc 20415058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 7306449 - 7306540
Alignment:
Q  157 ctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattatttctccaattatagagaattgc 248  Q
    |||||||||||||  || |||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||| | ||||| ||||||||    
T  7306449 ctttcgacataatccttgatagagaaccaacatatctttttgttgactctagatttcagtactctattagttctcaagttatacagaattgc 7306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 343 - 437
Target Start/End: Original strand, 21210479 - 21210573
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgata 437  Q
    |||||||||| |||||| ||| ||| ||| ||||| ||||||||||| |||||||||||||||||||||||||| ||| | || |||||||||||    
T  21210479 tgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttgaaatcatgata 21210573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 20414943 - 20414877
Alignment:
Q  354 tttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtt 420  Q
    |||||| ||||||| ||| ||||| ||||||||||||||  ||||||||||||||| ||||||||||    
T  20414943 tttaaggaattgagtccaagacttgtcatctccaaatttcatcatcttccatataataaaatcggtt 20414877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 435
Target Start/End: Complemental strand, 7328214 - 7328158
Alignment:
Q  379 tcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatga 435  Q
    ||||||||||||| |||||||||||||||||||||||| ||||  || |||||||||    
T  7328214 tcatctccaaattctgtcatcttccatataacaaaatctgttttgttgaaatcatga 7328158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 20456793 - 20456681
Alignment:
Q  136 tttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattatttctccaat 235  Q
    |||||||  ||||||||||| ||||| ||||||   || ||||||||||  | |  ||| || |||||| ||| ||||| |||| |||||||||||||||    
T  20456793 tttcaacaagttgaaaccaaactttcaacataacccttgatagagaacccgcttcccttatttttaactttaggtttcaatactatattatttctccaat 20456694  T
Q  236 tatagagaattgc 248  Q
    |||||||||||||    
T  20456693 tatagagaattgc 20456681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 420
Target Start/End: Complemental strand, 20456547 - 20456500
Alignment:
Q  373 gacttttcatctccaaattttgtcatcttccatataacaaaatcggtt 420  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  20456547 gacttgtcatccccaaattttgtcatcttccatataacaaaattggtt 20456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 21218709 - 21218808
Alignment:
Q  346 tagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaacaaa 445  Q
    ||||||| ||| || ||||||| ||| ||||| |||||||||||||  ||||| | ||||||||| ||||| ||| |||| ||||| ||||| |||||||    
T  21218709 tagctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaaatcgtgataaaaacaaa 21218808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 21218472 - 21218558
Alignment:
Q  127 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttc 213  Q
    |||||||||||||||   |||||||||||||||||||||||||  |  |  ||| |||||| |||||||||||||| ||||| ||||    
T  21218472 agaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctagctttc 21218558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 422
Target Start/End: Original strand, 29921991 - 29922070
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 422  Q
    ||||| |||||| |||| ||||||| ||| || | |||||| ||||||||  |||||| ||||||||||||||| |||||    
T  29921991 tgataactaattctaaggaattgagaccaagaatcttcatccccaaatttcttcatctgccatataacaaaatcagtttc 29922070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 414
Target Start/End: Original strand, 660842 - 660916
Alignment:
Q  340 ttatgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaa 414  Q
    |||||||| ||||||||||| ||||||| ||| |||| |||| ||| |||||   |||||| |||||||||||||    
T  660842 ttatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 7311247 - 7311281
Alignment:
Q  382 tctccaaattttgtcatcttccatataacaaaatc 416  Q
    |||||||||| ||||||||||||||||||||||||    
T  7311247 tctccaaattctgtcatcttccatataacaaaatc 7311281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 421
Target Start/End: Complemental strand, 36260325 - 36260247
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 421  Q
    ||||||||||||||||  | ||||  ||| |||| |||| ||||||||| |  ||||||||||||||||||||| ||||    
T  36260325 tgatagctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36260247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 9807866 - 9807793
Alignment:
Q  373 gacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaacaaag 446  Q
    |||| |||| |||||||||   |||||| ||||||||| ||||||||||  |||||||||||| | ||||||||    
T  9807866 gactcttcaactccaaattccttcatctgccatataacgaaatcggttttcttcaaatcatgacaaaaacaaag 9807793  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Complemental strand, 22028694 - 22028621
Alignment:
Q  349 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 422  Q
    ||||| ||||||||||||| ||| |||| |||| ||||| | |  ||||| |||||||||||||||| ||||||    
T  22028694 ctaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttc 22028621  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 20352310 - 20352274
Alignment:
Q  215 ctactctattatttctccaattatagagaattgcccg 251  Q
    |||||||||||| | ||||||||||||||||||||||    
T  20352310 ctactctattatatatccaattatagagaattgcccg 20352274  T

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Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 36263123 - 36263047
Alignment:
Q  345 atagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 421  Q
    |||||||| |||||  | ||||| ||| |||| |||| ||||||||| |  ||||||||||||||||||||| ||||    
T  36263123 atagctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttt 36263047  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 42298417 - 42298331
Alignment:
Q  127 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttc 213  Q
    |||||||||||||||   |||||||||||||||||||||||||  || || ||| |||||||||||||| ||||||  |||||||||    
T  42298417 agaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaatcctagttttc 42298331  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 420
Target Start/End: Original strand, 28763903 - 28763980
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtt 420  Q
    |||||||| ||||| || ||| ||  ||| ||||||||| |||||||||  |||||||||||||||||||||| ||||    
T  28763903 tgatagctgattttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatataacaaaatgggtt 28763980  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 416
Target Start/End: Complemental strand, 42298183 - 42298110
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatc 416  Q
    |||||||||| |||  | ||||||| ||| || |||||||||||||||| | |||||||||||||||| |||||    
T  42298183 tgatagctaactttgtggaattgagtccaagaattttcatctccaaattctatcatcttccatataactaaatc 42298110  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 18964671 - 18964703
Alignment:
Q  216 tactctattatttctccaattatagagaattgc 248  Q
    ||||||||||| |||||||||||||||||||||    
T  18964671 tactctattatctctccaattatagagaattgc 18964703  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 248
Target Start/End: Complemental strand, 2911375 - 2911254
Alignment:
Q  127 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttcactactctattat 226  Q
    |||||||||||||||   ||||| ||||||||||| ||||||| ||| ||||| ||||||| |||| | |||| || ||||||||||  | |||| |||     
T  2911375 agaacttactttcaagaagttgataccaagctttctacataatcgttcatagaaaaccaacgtatcctgttgtcaattctagttttctttgctctgttag 2911276  T
Q  227 ttctccaattatagagaattgc 248  Q
    ||||||  ||||||||||||||    
T  2911275 ttctccggttatagagaattgc 2911254  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 3560955 - 3561035
Alignment:
Q  342 atgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 422  Q
    |||||| ||||||||||| ||||||| ||| |||| |||| | ||||||||| |||||| ||| |||| ||||||||||||    
T  3560955 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttc 3561035  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 415
Target Start/End: Complemental strand, 53790619 - 53790553
Alignment:
Q  349 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaat 415  Q
    ||||||||||| ||||||| ||| || | ||||  |||||||||||||||||||||||||| |||||    
T  53790619 ctaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatataataaaat 53790553  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 421
Target Start/End: Complemental strand, 3565817 - 3565738
Alignment:
Q  342 atgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggttt 421  Q
    |||||| ||||||||||| ||||||| ||| |||| |||| | |||||||   |||||| |||||||| |||||||||||    
T  3565817 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttt 3565738  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 343 - 433
Target Start/End: Complemental strand, 53774912 - 53774822
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcat 433  Q
    ||||| ||||||||||| ||||||| ||| |||| |||| |||||||||   |||| | ||||||||||||||  ||||| || |||||||    
T  53774912 tgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcat 53774822  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 3557799 - 3557719
Alignment:
Q  342 atgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 422  Q
    |||||| ||||||||||| ||||||| ||| |||| |||| | |||||||   |||| | |||||||| ||||||||||||    
T  3557799 atgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggtttc 3557719  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 415
Target Start/End: Complemental strand, 35767090 - 35767018
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaat 415  Q
    |||||| |||||||||| | ||||  ||| |||| |||| ||||||||| |  ||||||||||||||||||||    
T  35767090 tgatagttaattttaaggagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaat 35767018  T

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Target: scaffold0128 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 343 - 443
Target Start/End: Complemental strand, 4209 - 4109
Alignment:
Q  343 tgatagctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaac 442  Q
    |||||||||| |||  | ||||||| ||| || ||||||| |||||||| |||||||||||||||||| |||||||| |  || ||||||||||| ||||    
T  4209 tgatagctaactttgtggaattgagtccaagaattttcatttccaaattctgtcatcttccatataaccaaatcggtcttcttgaaatcatgatacaaac 4110  T
Q  443 a 443  Q
    |    
T  4109 a 4109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 4443 - 4357
Alignment:
Q  127 agaacttactttcaacttgttgaaaccaagctttcgacataatggtttatagagaaccaacatatctttttgttaactctagttttc 213  Q
    |||||||||||||||   |||||||||||||||||||||||||  || || | |||||||| |||||||||||| | | ||||||||    
T  4443 agaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgggaaccaacgtatctttttgttgaatgtagttttc 4357  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 354 - 472
Target Start/End: Original strand, 43001448 - 43001566
Alignment:
Q  354 tttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttcattcaaatcatgatagaaacaaagtgaatcc 453  Q
    |||| |||||||||  || ||||||| || |||||||| | |||||||||||||||||||| | ||| | |  ||||||||||| ||||||||||||| |    
T  43001448 tttatgtaattgagttcaagactttttatatccaaattatatcatcttccatataacaaaaccagttccctcgaaatcatgataaaaacaaagtgaattc 43001547  T
Q  454 attaacatagaaacacctg 472  Q
    || |||  | |||||||||    
T  43001548 atcaactcacaaacacctg 43001566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 20712292 - 20712337
Alignment:
Q  128 gaacttactttcaacttgttgaaaccaagctttcgacataatggtt 173  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  20712292 gaacttactttcaacaagttgaaaccaagctttcgacataatggtt 20712337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 18908813 - 18908886
Alignment:
Q  349 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 422  Q
    |||||||| || ||||||| ||| |||| || | |||||||||   ||||||||||||||||||||| ||||||    
T  18908813 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18908886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 422
Target Start/End: Original strand, 18920769 - 18920842
Alignment:
Q  349 ctaattttaagtaattgagcccacgacttttcatctccaaattttgtcatcttccatataacaaaatcggtttc 422  Q
    |||||||| || ||||||| ||| |||| || | |||||||||   ||||||||||||||||||||| ||||||    
T  18920769 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtttc 18920842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 173
Target Start/End: Original strand, 16131 - 16176
Alignment:
Q  128 gaacttactttcaacttgttgaaaccaagctttcgacataatggtt 173  Q
    |||||||||||||||  |||||||||||||||||||||||||||||    
T  16131 gaacttactttcaacaagttgaaaccaagctttcgacataatggtt 16176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 246
Target Start/End: Complemental strand, 17369890 - 17369860
Alignment:
Q  216 tactctattatttctccaattatagagaatt 246  Q
    |||||||||||||||||||||||||||||||    
T  17369890 tactctattatttctccaattatagagaatt 17369860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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