View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-INSERTION-11 (Length: 364)
Name: NF1390-INSERTION-11
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-INSERTION-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 44356822 - 44356478
Alignment:
| Q |
8 |
aaacgaaggaacgaacaatatttctattctcagcgatatggttggacttccggtatgttttttttaaggatttctagtgttataatacnnnnnnnnnnna |
107 |
Q |
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| T |
44356822 |
aaacgaaagaacgaacaatatttctattctcagcggtatggttggacttccggtatgttttttttaaggatttctagtgttataatacttttttttttta |
44356723 |
T |
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| Q |
108 |
ctttgtaacatttaagtctgagatattttgtgttggtttataggattcaggggcatttcttgaaaaaagatttgctggtttaaacaatgtggaacttcag |
207 |
Q |
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| T |
44356722 |
ctttgtaacatttaagtctgagatattttgtgttggtttataggattcaggggcatttcttgaaaaaagatttgctggtttaaacaatgtggaacttcag |
44356623 |
T |
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| Q |
208 |
tgcagtgaacaagagtctcttaatttgaacaattctacatggggatatcaggttacctattatataccgtcaataatcaaattttgtttacctaataatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44356622 |
tgcagtgaacaagagtctcttaatttgaacaattctacatggggatatcaggttacc------------tcaataatcaaattttgtttacctaataatt |
44356535 |
T |
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| Q |
308 |
tttacattatcacccctgatatgtgtgtcaactttttcatcaatcttgtgtactata |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44356534 |
tttacattatcacccctgatatgtgtgtcaactttttcatcaatcttgtgtactata |
44356478 |
T |
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