View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_1 (Length: 825)
Name: NF13900_high_1
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 408 - 745
Target Start/End: Original strand, 32062297 - 32062634
Alignment:
| Q |
408 |
ctatgtagtgtgttgtgttgtatgtgatgttacaaccatgcacatagaaagatagagataaaagatcttgtttacgttaattgatgattggtatttgaca |
507 |
Q |
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| T |
32062297 |
ctatgtagtgtgttgtgttgtatgtgatgttacaaccatgcacatagaaagatagagataaaagatcttgtttacgttaattgatgattggtatttgaca |
32062396 |
T |
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| Q |
508 |
ctaacattgagnnnnnnngaggagaaaaagtgaatatgatgaatatgaatggaacatggtaaccgtaattactgagagaaagggtttatagagagagaaa |
607 |
Q |
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| T |
32062397 |
ctaacattgagaaaaaaagaggagaaaaagtgaatatgatgaatatgaatggaacatggtaaccgtaattactgagagaaagggtttatagagagagaaa |
32062496 |
T |
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| Q |
608 |
gagatagtgcatgcaaaatgcatatataacatacaaacacaatacacgcacgcatagagataaagattgtgcaaaatgcatgcatactcattattattgt |
707 |
Q |
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| T |
32062497 |
gagatagtgcatgcaaaatgcatatataacatacaaacacaatacacgcacgcatagagataaagattgtgcaaaatgcatgcatactcattattattgt |
32062596 |
T |
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| Q |
708 |
ttcattcataatccataataataacaccgtttacctta |
745 |
Q |
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| T |
32062597 |
ttcattcataatccataataataacaccgtttacctta |
32062634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 32061882 - 32062013
Alignment:
| Q |
1 |
agaaatgaaatttacccgcatttgttgcagagtttggcaaacccaccagagatcaaagaccaccctttcttccattcaccagttgaaccttccttacaat |
100 |
Q |
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| T |
32061882 |
agaaatgaaatttacccgcatttgttgcagagtttggcaaacccaccagagatcaaagaccaccctttcttccattcaccagttgaaccttccttacaat |
32061981 |
T |
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| Q |
101 |
aattattcatacacacttcaacccccattgaa |
132 |
Q |
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| T |
32061982 |
aattattcatacacacttcaacccccattgaa |
32062013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 32062092 - 32062199
Alignment:
| Q |
211 |
gttagtgttgaattcaaacatcaattaatttcacttcactgaaacaacccactacagaag-nnnnnnnnttacatacaaattaaaataccagtttcaaga |
309 |
Q |
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| T |
32062092 |
gttagtgttgaattcaaacatcaattaatttcacttcactgaaacaacccagtacagaagaaaaaaaaattacatacaaattaaaataccagtttcaaga |
32062191 |
T |
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| Q |
310 |
ttcaagat |
317 |
Q |
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| T |
32062192 |
ttcaagat |
32062199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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