View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13900_high_10 (Length: 519)

Name: NF13900_high_10
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13900_high_10
NF13900_high_10
[»] chr6 (9 HSPs)
chr6 (36-232)||(2843783-2843979)
chr6 (282-499)||(2844032-2844248)
chr6 (412-488)||(30775347-30775423)
chr6 (387-486)||(19763539-19763638)
chr6 (398-461)||(10682519-10682582)
chr6 (401-483)||(13685396-13685478)
chr6 (393-486)||(19789229-19789322)
chr6 (398-460)||(34427089-34427151)
chr6 (372-420)||(6314009-6314057)
[»] chr3 (24 HSPs)
chr3 (372-501)||(36177199-36177328)
chr3 (333-451)||(29096142-29096260)
chr3 (372-488)||(35424129-35424245)
chr3 (372-498)||(1995563-1995689)
chr3 (372-494)||(15877748-15877870)
chr3 (333-488)||(45266819-45266975)
chr3 (372-498)||(52313870-52313996)
chr3 (372-498)||(53464280-53464406)
chr3 (372-496)||(35496096-35496220)
chr3 (393-486)||(40793171-40793264)
chr3 (372-494)||(49644349-49644471)
chr3 (374-461)||(28939697-28939784)
chr3 (372-482)||(49786945-49787055)
chr3 (372-455)||(11467230-11467313)
chr3 (333-460)||(14898406-14898533)
chr3 (398-483)||(35846158-35846243)
chr3 (333-460)||(41031153-41031280)
chr3 (372-462)||(4489832-4489922)
chr3 (424-498)||(7352575-7352649)
chr3 (372-442)||(20207064-20207134)
chr3 (392-432)||(7352125-7352165)
chr3 (379-438)||(33104007-33104066)
chr3 (379-481)||(20809622-20809724)
chr3 (393-438)||(55051791-55051836)
[»] chr8 (15 HSPs)
chr8 (322-464)||(37479127-37479270)
chr8 (372-501)||(40278950-40279079)
chr8 (372-498)||(11425473-11425598)
chr8 (392-488)||(35158869-35158965)
chr8 (392-498)||(18227005-18227111)
chr8 (333-433)||(34954345-34954444)
chr8 (387-483)||(27594267-27594363)
chr8 (387-494)||(1156273-1156380)
chr8 (392-486)||(9682365-9682458)
chr8 (392-486)||(17312857-17312950)
chr8 (372-451)||(5191332-5191411)
chr8 (372-455)||(45251487-45251569)
chr8 (372-461)||(30234966-30235055)
chr8 (398-483)||(27107774-27107858)
chr8 (398-455)||(40713778-40713835)
[»] chr7 (21 HSPs)
chr7 (372-498)||(44396373-44396499)
chr7 (333-452)||(38346439-38346558)
chr7 (372-498)||(48252873-48252999)
chr7 (372-488)||(49080762-49080877)
chr7 (372-461)||(43598811-43598900)
chr7 (372-481)||(43692536-43692645)
chr7 (398-483)||(8404748-8404833)
chr7 (371-494)||(49081221-49081344)
chr7 (372-486)||(36725776-36725890)
chr7 (387-460)||(36118058-36118131)
chr7 (374-461)||(8099646-8099733)
chr7 (392-454)||(12879285-12879347)
chr7 (379-453)||(23869931-23870005)
chr7 (379-460)||(40160334-40160415)
chr7 (379-428)||(42691372-42691421)
chr7 (372-464)||(29681429-29681521)
chr7 (385-488)||(46700851-46700954)
chr7 (418-488)||(32485454-32485524)
chr7 (414-460)||(41159390-41159436)
chr7 (398-434)||(37626915-37626951)
chr7 (379-455)||(38994818-38994894)
[»] chr5 (21 HSPs)
chr5 (358-493)||(39060188-39060323)
chr5 (392-498)||(34769574-34769680)
chr5 (372-488)||(23089310-23089426)
chr5 (372-453)||(4925098-4925179)
chr5 (392-486)||(9959322-9959415)
chr5 (372-464)||(23090659-23090751)
chr5 (333-445)||(35470271-35470383)
chr5 (392-488)||(14913457-14913553)
chr5 (411-501)||(35211935-35212025)
chr5 (370-460)||(10523856-10523946)
chr5 (390-453)||(16280927-16280990)
chr5 (412-498)||(35205137-35205223)
chr5 (387-445)||(38697903-38697961)
chr5 (387-460)||(14593889-14593962)
chr5 (370-433)||(7011792-7011855)
chr5 (393-450)||(2907804-2907861)
chr5 (398-455)||(34383710-34383767)
chr5 (403-498)||(37902400-37902496)
chr5 (372-416)||(38744668-38744712)
chr5 (372-434)||(29812029-29812091)
chr5 (379-431)||(10923737-10923789)
[»] chr4 (24 HSPs)
chr4 (333-452)||(30052316-30052435)
chr4 (372-494)||(779885-780007)
chr4 (372-498)||(5415163-5415289)
chr4 (372-498)||(23560001-23560127)
chr4 (375-498)||(41377370-41377493)
chr4 (372-479)||(55875827-55875934)
chr4 (333-460)||(34388825-34388952)
chr4 (372-498)||(52326994-52327120)
chr4 (393-487)||(7907413-7907504)
chr4 (372-460)||(38567952-38568040)
chr4 (392-486)||(9268331-9268424)
chr4 (372-461)||(46382002-46382091)
chr4 (392-486)||(2681112-2681205)
chr4 (379-455)||(17476202-17476278)
chr4 (372-498)||(48262976-48263106)
chr4 (393-460)||(43354989-43355055)
chr4 (379-461)||(19485772-19485854)
chr4 (333-454)||(31648618-31648737)
chr4 (398-486)||(2714221-2714309)
chr4 (374-461)||(55876020-55876107)
chr4 (381-434)||(37556289-37556342)
chr4 (372-424)||(4974605-4974657)
chr4 (422-488)||(43264451-43264517)
chr4 (400-460)||(30875381-30875441)
[»] chr1 (20 HSPs)
chr1 (372-479)||(47394377-47394484)
chr1 (372-494)||(23570992-23571114)
chr1 (377-488)||(51613251-51613362)
chr1 (372-498)||(7900142-7900268)
chr1 (372-486)||(19993361-19993475)
chr1 (375-482)||(10574351-10574458)
chr1 (372-488)||(50428463-50428579)
chr1 (392-498)||(43496384-43496490)
chr1 (358-494)||(37457614-37457750)
chr1 (372-498)||(7167982-7168108)
chr1 (392-486)||(46823637-46823730)
chr1 (358-455)||(19322791-19322888)
chr1 (387-454)||(26707124-26707191)
chr1 (372-488)||(1035741-1035857)
chr1 (372-455)||(16679939-16680022)
chr1 (372-460)||(27641543-27641631)
chr1 (366-453)||(8848117-8848203)
chr1 (384-443)||(19466340-19466399)
chr1 (379-434)||(29058592-29058647)
chr1 (372-416)||(27540987-27541031)
[»] chr2 (22 HSPs)
chr2 (372-488)||(14657497-14657612)
chr2 (372-455)||(8322157-8322240)
chr2 (398-494)||(6858982-6859078)
chr2 (379-498)||(37069893-37070013)
chr2 (392-498)||(39375713-39375819)
chr2 (379-488)||(9104567-9104676)
chr2 (372-488)||(32914444-32914560)
chr2 (386-501)||(18565739-18565854)
chr2 (386-461)||(40095790-40095865)
chr2 (372-453)||(33386700-33386781)
chr2 (387-487)||(5147101-5147201)
chr2 (366-488)||(3739843-3739965)
chr2 (394-488)||(4897248-4897342)
chr2 (394-488)||(4944642-4944736)
chr2 (387-460)||(3739486-3739559)
chr2 (418-498)||(7395456-7395536)
chr2 (387-494)||(38609918-38610025)
chr2 (372-416)||(13250507-13250551)
chr2 (379-442)||(3384722-3384785)
chr2 (416-494)||(9993023-9993101)
chr2 (385-441)||(8443222-8443278)
chr2 (379-427)||(37258309-37258358)
[»] scaffold0015 (1 HSPs)
scaffold0015 (373-486)||(56574-56687)
[»] scaffold0110 (2 HSPs)
scaffold0110 (372-498)||(13787-13914)
scaffold0110 (372-498)||(21524-21651)
[»] scaffold0032 (1 HSPs)
scaffold0032 (372-459)||(37939-38026)
[»] scaffold0014 (1 HSPs)
scaffold0014 (379-450)||(198007-198078)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 36 - 232
Target Start/End: Original strand, 2843783 - 2843979
Alignment:
Q  36 taggataggaatggattaggataggatatgatagaattatttctaaactttcttttttgtttacaaaataaaaaatacctcactttcaaattaaacatca 135  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2843783 taggataggaatggattaggataggataggatagaattatttctaaactttcttttttgtttacaaaataaaaaatacctcactttcaaattaaacatca 2843882  T
Q  136 agatagttccacgtctaaaatttctaccacgtctagttcaagatatcaaggatataataccttcaacctacaacaaatttcattaatttgtttttaa 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2843883 agatagttccacgtctaaaatttctaccacgtctagttcaagatatcaaggatataataccttcaacctacaacaaatttcattaatttgtttttaa 2843979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 282 - 499
Target Start/End: Original strand, 2844032 - 2844248
Alignment:
Q  282 tatttacttttctccgtgaaagatcaaatgcgctaataatttagaatgtgaataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttt 381  Q
    ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2844032 tatttacttttctgcgtgaaagatcaaatgggctaataatt-agaatgtgaataaatttgaggtgtattgtgtgattaagtggaatctaatttagagttt 2844130  T
Q  382 tagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttatacca 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  2844131 tagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattgggaagtgtgaagtaatataatgtattatgtgaaactcatttatacca 2844230  T
Q  482 cccatatcggtggcatga 499  Q
    ||||||||||||||||||    
T  2844231 cccatatcggtggcatga 2844248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 412 - 488
Target Start/End: Complemental strand, 30775423 - 30775347
Alignment:
Q  412 tagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||   |||||||||||||||| ||||    
T  30775423 tagttgagtggtttaaataattgaaaagtgtgaagtaatataatgtattatgtaggacccatttataccacctatat 30775347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 387 - 486
Target Start/End: Complemental strand, 19763638 - 19763539
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    |||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||  ||||| ||   ||||| |||||||||||||    
T  19763638 gagtggtatgaatatttagaaaatgtaattaagtggtttaaataattggaaagtgtgaagtaatataaaatattacgtgggacccagttataccacccat 19763539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 398 - 461
Target Start/End: Original strand, 10682519 - 10682582
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  10682519 atatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatataatatatta 10682582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 483
Target Start/End: Complemental strand, 13685478 - 13685396
Alignment:
Q  401 tttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacc 483  Q
    |||| ||||| |||||||||| |||||||||||| ||||| | || ||||||||||||||||||   ||||||||||||||||    
T  13685478 tttagaaaatatagttgagtgttttaaataattgaaaagtataaaataatataatgtattatgtgggacccatttataccacc 13685396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 486
Target Start/End: Complemental strand, 19789322 - 19789229
Alignment:
Q  393 tatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    |||||||||||| |||||||| || |||| |||||||||||| ||||||||  |||||||||  ||||| ||   ||||| |||||||||||||    
T  19789322 tatgaatatttagaaaatgtaattaagtgatttaaataattgaaaagtgtggcgtaatataaaatattacgtgggacccagttataccacccat 19789229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 460
Target Start/End: Original strand, 34427089 - 34427151
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    |||||||||||| |||||||||| ||||||||||||   |||||| |||||| ||||| ||||    
T  34427089 atatttaaaaaaagtagttgagtagtttaaataattaagaagtgttaagtaacataatatatt 34427151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 6314057 - 6314009
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagt 420  Q
    |||||||||||  | ||||  ||||||||||||||||||||||||||||    
T  6314057 tttagagttttgaaagagtgctatgaatatttaaaaaatgtagttgagt 6314009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 3e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 372 - 501
Target Start/End: Original strand, 36177199 - 36177328
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||   ||||    
T  36177199 tttagagttttaaatgagtggtatgaatatttaaaaaatgtagatgagtggttcaaataattggaaagtgtgaagtaatataatctattatgtgggaccc 36177298  T
Q  472 atttataccacccatatcggtggcatgaat 501  Q
    |||||||||| |||||| ||||||||||||    
T  36177299 atttataccatccatataggtggcatgaat 36177328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 333 - 451
Target Start/End: Complemental strand, 29096260 - 29096142
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    ||||||||||||||||| ||||||||| |||| | |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||    
T  29096260 ataaatttgaggtgtattgtgtgattaggtgggacctaatttagagttttaaatgagtggtatgaatatttaaataatgtagttgagtggtttaaataat 29096161  T
Q  433 tggaaagtgtgaagtaata 451  Q
    || ||| ||||||||||||    
T  29096160 tgaaaaatgtgaagtaata 29096142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 372 - 488
Target Start/End: Complemental strand, 35424245 - 35424129
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||| | || ||||| ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | ||||    
T  35424245 tttagagttttagaagggtggtatggatatttagaaaatgtagttgagtggtttaaataattgaaaaatgtgaagtaatataatgtattatgtgagaccc 35424146  T
Q  472 atttataccacccatat 488  Q
    ||||||||||| |||||    
T  35424145 atttataccactcatat 35424129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 1995689 - 1995563
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||| | |||| ||||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||   ||||    
T  1995689 tttagagttttaaaggagtggtatggatatttagaaaatgtagttaagtggtttaaataattgggaagtgtgaagtaatataatgtattatgtgggaccc 1995590  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    |||||||||| || ||| |||| ||||    
T  1995589 atttataccatccgtatgggtgacatg 1995563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 494
Target Start/End: Complemental strand, 15877870 - 15877748
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    ||||||||||| || |||| ||||| ||||||| ||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||   ||||    
T  15877870 tttagagttttggaggagtggtatggatatttagaaaatatagttgagtggtttaaataatggaaaaatgtgaagtaatataatgtattatgtgggaccc 15877771  T
Q  472 atttataccacccatatcggtgg 494  Q
    ||||||||||||||||| |||||    
T  15877770 atttataccacccatatgggtgg 15877748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 333 - 488
Target Start/End: Original strand, 45266819 - 45266975
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatg-tagttgagtggtttaaataa 431  Q
    ||||||||||||||||| ||||||||||||||||   ||||| ||||||| |||| || ||||||||||||| |||||| ||||| |||||||||||| |    
T  45266819 ataaatttgaggtgtattgtgtgattaagtggaacgcaattttgagttttggatgggtggtatgaatatttagaaaatgctagtttagtggtttaaatga 45266918  T
Q  432 ttggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    |||  ||||||||| ||||||||||||||  ||   ||||||||||||||| |||||    
T  45266919 ttgagaagtgtgaaataatataatgtattcggtgtgacccatttataccacacatat 45266975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 52313996 - 52313870
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||  |||| ||||| ||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||    |||    
T  52313996 tttagagttttaggggagtggtatggatatttagaaaatgtagttgagtggtttaaataactagaaagtgtaaagtaatataatgtaatatgtgggtccc 52313897  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    ||||||||||||||| | |||||||||    
T  52313896 atttataccacccatttgggtggcatg 52313870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 53464406 - 53464280
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||  |||| ||||| ||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||    |||    
T  53464406 tttagagttttaggggagtggtatggatatttagaaaatgtagttgagtggtttaaataactagaaagtgtaaagtaatataatgtaatatgtgggtccc 53464307  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    ||||||||||||||| | |||||||||    
T  53464306 atttataccacccatttgggtggcatg 53464280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 372 - 496
Target Start/End: Complemental strand, 35496220 - 35496096
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||| ||||| |||||||||| | ||| ||||||||||||||| || ||||||||||||  ||||||||||||||||||| ||||||||   ||||    
T  35496220 tttagagtattagaagagtagtatggaaattaaaaaaatgtagttgaatgatttaaataattgagaagtgtgaagtaatataatatattatgtaggaccc 35496121  T
Q  472 atttataccacccatatcggtggca 496  Q
    ||||||||||| ||||| |||||||    
T  35496120 atttataccactcatataggtggca 35496096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 393 - 486
Target Start/End: Complemental strand, 40793264 - 40793171
Alignment:
Q  393 tatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||  || |||||||||||||||||    
T  40793264 tatgaatatttataaaatgtagttgagtggtttaaataattgaaaagtgagaagtaatataaagtattacgtggaatccatttataccacccat 40793171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 372 - 494
Target Start/End: Original strand, 49644349 - 49644471
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    ||||||||||| ||||||| | ||| |||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||| ||     ||    
T  49644349 tttagagttttggatgagtggcatggatatttgaaaaatgtagttgagtggtttaaataattgagaagtgtgaagtaatataatatattaagtggggtcc 49644448  T
Q  472 atttataccacccatatcggtgg 494  Q
    ||||| ||||||||||| |||||    
T  49644449 atttaaaccacccatatgggtgg 49644471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 28939784 - 28939697
Alignment:
Q  374 tagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    ||||||||| |||||||  |||||||||||| ||||||||||||||| |||||||||||||  ||||||||||||||||||| |||||    
T  28939784 tagagttttggatgagtgatatgaatatttagaaaatgtagttgagtagtttaaataattgagaagtgtgaagtaatataatatatta 28939697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 482
Target Start/End: Complemental strand, 49787055 - 49786945
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||  | ||  ||| ||||||||| |||||| | |  |||    
T  49787055 tttaaagttttagatgagtggtatgaatatttataaaatatagttgagtggtttaaataattgagatgtaagaaataatataatatattatatgagtccc 49786956  T
Q  472 atttataccac 482  Q
    |||||||||||    
T  49786955 atttataccac 49786945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 11467313 - 11467230
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    |||||| ||||||| ||||  |||| ||||||| ||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  11467313 tttagaattttagaggagtgatatggatatttagaaaatgtagttgattggtttaaataattgagaagtgtgaagtaatataat 11467230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 460
Target Start/End: Original strand, 14898406 - 14898533
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    |||||||||||||||||  | |||||||  || |   |||||||||||||  || ||| ||||||||||||| ||||||||||| ||||||||||| |||    
T  14898406 ataaatttgaggtgtattatatgattaaaagggactcaatttagagttttgaataagtggtatgaatatttagaaaatgtagtttagtggtttaaacaat 14898505  T
Q  433 tggaaagtgtgaagtaatataatgtatt 460  Q
    || ||| ||| || ||||||||||||||    
T  14898506 tgaaaaatgtaaaataatataatgtatt 14898533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 35846243 - 35846158
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacc 483  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||| || |||||||| |||||| || | |||||||||| |||||    
T  35846243 atatttagaaaatgtagttgaatggtttaaataattgaaaagtgtaaaataatataaagtattacgtgagacccatttattccacc 35846158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 460
Target Start/End: Complemental strand, 41031280 - 41031153
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    |||||||||||||||||  | | |||| |||| | | ||||||||||||| |||  || ||||||||||||| ||||| ||||| | | |||| ||||||    
T  41031280 ataaatttgaggtgtattatataattaggtgggacccaatttagagttttggattggtggtatgaatatttagaaaatctagtttaatagtttcaataat 41031181  T
Q  433 tggaaagtgtgaagtaatataatgtatt 460  Q
    | |||||| | || ||||||||||||||    
T  41031180 tagaaagtataaaataatataatgtatt 41031153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 462
Target Start/End: Original strand, 4489832 - 4489922
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattat 462  Q
    |||||||||||| |||||| |||| |||||||| ||||| || ||||||||| |||||||||||||  | | || ||||||||| ||||||    
T  4489832 tttagagttttaaatgagtggtataaatatttataaaatataattgagtggtataaataattggaatatataaaataatataatatattat 4489922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 424 - 498
Target Start/End: Original strand, 7352575 - 7352649
Alignment:
Q  424 ttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcggtggcatg 498  Q
    |||||||||||| |||||||| |||||||||||||||||||   |||| ||||||||||||| || |||| ||||    
T  7352575 ttaaataattgggaagtgtgaggtaatataatgtattatgtgggacccgtttataccacccaaatgggtgacatg 7352649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 442
Target Start/End: Complemental strand, 20207134 - 20207064
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgt 442  Q
    |||||||||||  ||||||  |||||||||||| ||||||| ||||||| |||||||||||| ||||||||    
T  20207134 tttagagttttgaatgagttttatgaatatttagaaaatgtggttgagttgtttaaataattagaaagtgt 20207064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 432
Target Start/End: Original strand, 7352125 - 7352165
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  7352125 gtatgaatatttaaaaaatgtagttgaatggtttaaataat 7352165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 438
Target Start/End: Original strand, 33104007 - 33104066
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaa 438  Q
    |||||||| ||| ||||| |||||| |||||||||||||||| |||||||||||| ||||    
T  33104007 ttttagataagtggtatggatattttaaaaatgtagttgagttgtttaaataattagaaa 33104066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 481
Target Start/End: Complemental strand, 20809724 - 20809622
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttata 478  Q
    |||| ||||| | |||| |||||| | ||||| ||||| ||| ||||||||||||  ||||| |||||||||||||  ||||| |||||  | |||||||    
T  20809724 ttttggatgattggtataaatattcagaaaatatagttaagttgtttaaataattaaaaagtatgaagtaatataaaatattaagtcaagtctatttata 20809625  T
Q  479 cca 481  Q
    |||    
T  20809624 cca 20809622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Original strand, 55051791 - 55051836
Alignment:
Q  393 tatgaatatttaaaaaatgtagttgagtggtttaaataattggaaa 438  Q
    |||||||||||| ||||||||||| |||  ||||||||||||||||    
T  55051791 tatgaatatttagaaaatgtagtttagtaatttaaataattggaaa 55051836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 4e-42; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 322 - 464
Target Start/End: Original strand, 37479127 - 37479270
Alignment:
Q  322 ttagaatgtgaataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatattt-aaaaaatgtagttgagt 420  Q
    ||||||||||||||||||||| ||||||  | ||||||||||| ||  ||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  37479127 ttagaatgtgaataaatttgaagtgtattatatgattaagtgggattcaatttagagttttagatgagtagtatggatatttaaaaaaatgtagttgagt 37479226  T
Q  421 ggtttaaataattggaaagtgtgaagtaatataatgtattatgt 464  Q
    |||||||||||||| ||||| | |||||||||||| ||||||||    
T  37479227 ggtttaaataattgaaaagtttaaagtaatataatatattatgt 37479270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 372 - 501
Target Start/End: Original strand, 40278950 - 40279079
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||  |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||    |||    
T  40278950 tttagagttttagtggagtggtatggatatttagaaaatgtagttgagtggtttaaataattggaaagtataaagtaatataatatattatgtgggtccc 40279049  T
Q  472 atttataccacccatatcggtggcatgaat 501  Q
    ||||||||||| ||| | ||||||||||||    
T  40279050 atttataccactcatttgggtggcatgaat 40279079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 11425598 - 11425473
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||| | |||||||||||| |||||| |||||||||||| ||||||||  | |||    
T  11425598 tttagagttttagaggagt-gtatgaatatttagaaaatgtagttgagtcggttaaataattgggaagtgtaaagtaatataatatattatgtggatccc 11425500  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    |||||||||| |||| | |||||||||    
T  11425499 atttataccatccatttgggtggcatg 11425473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 35158965 - 35158869
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||||| ||||| |||| || ||||||||||||||||||    
T  35158965 gtatgaatatttagaaaatgtagttgagtggtttaaataattgggaagtgtccagtaatataatatattaagtcagactcatttataccacccatat 35158869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 392 - 498
Target Start/End: Original strand, 18227005 - 18227111
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcgg 491  Q
    ||||| ||||||||||||||||||||  |||||||||||||||| |||||||| |||||||||||||||||||   |||| ||||||||||||| || ||    
T  18227005 gtatggatatttaaaaaatgtagttggatggtttaaataattgggaagtgtgaggtaatataatgtattatgtgggacccgtttataccacccaaatggg 18227104  T
Q  492 tggcatg 498  Q
    |||||||    
T  18227105 tggcatg 18227111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 433
Target Start/End: Complemental strand, 34954444 - 34954345
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    ||||||||||||||||| |||| |||| |||||  | |||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||    
T  34954444 ataaatttgaggtgtattgtgtaattaggtggaccc-aatttaaagttttagataagcagtataaatatttaaaaaatgtagttgagtggtttaaataat 34954346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 387 - 483
Target Start/End: Original strand, 27594267 - 27594363
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacc 483  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| | |||| ||   |||||||||| |||||    
T  27594267 gagtggtatgaatatttagaaaatgtagttgagtggtttaaataattggaaggtgtgaaataatataaagaattacgtgggacccatttattccacc 27594363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 387 - 494
Target Start/End: Original strand, 1156273 - 1156380
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    |||| ||||| ||||||| || || ||||| |||||||||||||||||| ||||||||| ||||||| ||||||| || | ||||||||||||||| |||    
T  1156273 gagtggtatggatatttagaagatatagtttagtggtttaaataattgggaagtgtgaaataatatattgtattacgtgagacccatttataccactcat 1156372  T
Q  487 atcggtgg 494  Q
    || |||||    
T  1156373 atgggtgg 1156380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 486
Target Start/End: Original strand, 9682365 - 9682458
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    ||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |   |||||||||||||||||||    
T  9682365 gtatggatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta-ctgggacccatttataccacccat 9682458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 486
Target Start/End: Original strand, 17312857 - 17312950
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    ||||| ||||||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||  | | |||||||||||||| ||||    
T  17312857 gtatggatatttagaagatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta-ctgagacccatttataccatccat 17312950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 451
Target Start/End: Original strand, 5191332 - 5191411
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaata 451  Q
    |||||| |||| |||||||  ||||||||||| ||||||||| |||||| |||||| |||||| ||||||||||||||||    
T  5191332 tttagaattttggatgagtgatatgaatatttgaaaaatgtaattgagtagtttaagtaattgaaaagtgtgaagtaata 5191411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 45251569 - 45251487
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    |||||||||||||| |||||||||| |||||||||||||||| || ||||||||||||||| | ||| |||||| ||| |||||    
T  45251569 tttagagttttaga-gagtagtatggatatttaaaaaatgtatttaagtggtttaaataatagaaaaatgtgaaataacataat 45251487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 461
Target Start/End: Complemental strand, 30235055 - 30234966
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    ||||||||||| |||| || |||| ||||||||||||||  |||||||| ||||||||| |||| || ||| || |||||||| ||||||    
T  30235055 tttagagtttttgatgggttgtataaatatttaaaaaatacagttgagttgtttaaatatttgggaaatgtaaaataatataaagtatta 30234966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 27107858 - 27107774
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacc 483  Q
    ||||||||||||| ||||||||| |||||| ||||| | |||||||| |||||||| | |||||  |  || ||||||||||||||    
T  27107858 atatttaaaaaatatagttgagtagtttaactaattag-aagtgtgatgtaatatattatattagatggaatccatttataccacc 27107774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 40713835 - 40713778
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    ||||||||||||||| ||| | | ||||||||||||  |||||||||| |||||||||    
T  40713835 atatttaaaaaatgtggtttacttgtttaaataatttaaaagtgtgaaataatataat 40713778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 372 - 498
Target Start/End: Original strand, 44396373 - 44396499
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||||| ||||||||  | |||    
T  44396373 tttagagttttagaggagtggtatgaatatttagaaaatgtagttgagtgggttaaataattgggaagtgtaaagtaatataatatattatgtggatccc 44396472  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    |||||||||| |||| | |||||||||    
T  44396473 atttataccatccatttgggtggcatg 44396499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 333 - 452
Target Start/End: Complemental strand, 38346558 - 38346439
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    ||||||||||||||||| ||||||||| |||| | | |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  38346558 ataaatttgaggtgtattgtgtgattaggtgggacccaatttaaagttttagatgagttgtataaatatttaaaaaatgtagttgagtggtttaaataat 38346459  T
Q  433 tggaaagtgtgaagtaatat 452  Q
    |  ||| | |||||||||||    
T  38346458 taaaaaatatgaagtaatat 38346439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 372 - 498
Target Start/End: Original strand, 48252873 - 48252999
Alignment:
Q  372 tttagagttttagatgagtagtatgaatattta-aaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacc 470  Q
    ||||||||||| || |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |   |||    
T  48252873 tttagagttttgga-gagtggtatggatatttagaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataaaatattatatgggacc 48252971  T
Q  471 catttataccacccatatcggtggcatg 498  Q
    ||||||||| || ||||| |||||||||    
T  48252972 catttatactactcatatgggtggcatg 48252999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 372 - 488
Target Start/End: Complemental strand, 49080877 - 49080762
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||| ||||| || ||||||  ||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||| |||||||| | ||||    
T  49080877 tttagagtattagaagattagtattgatatttaaaaaatgtagta-agtggtttaaataattgaaaagtgtgaagtaatataatatattatgtaagaccc 49080779  T
Q  472 atttataccacccatat 488  Q
    |||||||| || |||||    
T  49080778 atttatacaactcatat 49080762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 461
Target Start/End: Original strand, 43598811 - 43598900
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    |||| |||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||  ||||||||| ||||||||| |||||    
T  43598811 tttaaagttttagatgagtggtatgaatatttgaaaaatatagttgagtggtttaaataattgagaagtgtgaactaatataatatatta 43598900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 481
Target Start/End: Original strand, 43692536 - 43692645
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||| ||||||||| |||| |||| |||||||||||||| ||| |||||||||||||||||||  ||||||||| ||||||||||||||||||   |||     
T  43692536 tttaaagttttagaagagtggtataaatatttaaaaaatttagatgagtggtttaaataattgagaagtgtgaaataatataatgtattatgtgggacct 43692635  T
Q  472 atttatacca 481  Q
    ||||||||||    
T  43692636 atttatacca 43692645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 398 - 483
Target Start/End: Complemental strand, 8404833 - 8404748
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacc 483  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||| ||   |||||||||| |||||    
T  8404833 atatttaaaaaatgtaattgagtggtttaaataattggaaagtgtgaaataatataaagtattacgtgggacccatttattccacc 8404748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 371 - 494
Target Start/End: Original strand, 49081221 - 49081344
Alignment:
Q  371 atttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacc 470  Q
    ||||| |||||||||||||| |||| |||||||| ||||||||| ||| || |||||||||||| ||| | | || |||||||||||||||| | | |||    
T  49081221 atttaaagttttagatgagtggtataaatatttagaaaatgtagatgaatgatttaaataattgaaaaatataaaataatataatgtattatatgagacc 49081320  T
Q  471 catttataccacccatatcggtgg 494  Q
    ||||||||||| | |||| |||||    
T  49081321 catttataccatctatatgggtgg 49081344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 372 - 486
Target Start/End: Original strand, 36725776 - 36725890
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    ||||||||||| ||||| | ||||||||||||| ||| |||||||||||||||||||||||||  |||||| || |||||||| | |||| ||   | ||    
T  36725776 tttagagtttttgatgaatggtatgaatatttagaaattgtagttgagtggtttaaataattgagaagtgtaaaataatataaagaattaagtgggatcc 36725875  T
Q  472 atttataccacccat 486  Q
    |||||||||||||||    
T  36725876 atttataccacccat 36725890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 36118131 - 36118058
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| |  |||||| || ||||||||||||||    
T  36118131 gagtagtatgaatatttagaaaatgtaattgagtggtttaaataatagagaagtgttaaataatataatgtatt 36118058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 8099733 - 8099646
Alignment:
Q  374 tagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    ||||||||| ||||||| |||| |||||||||||||||||||||| |  ||||||  |||  |||||||||||||||||||| |||||    
T  8099733 tagagttttggatgagttgtataaatatttaaaaaatgtagttgaattatttaaaatattcaaaagtgtgaagtaatataatatatta 8099646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 12879347 - 12879285
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataa 454  Q
    ||||||||||||| ||||| |||||| || |||||||||||||  ||||||||||||||||||    
T  12879347 gtatgaatatttagaaaatatagttgtgttgtttaaataattgagaagtgtgaagtaatataa 12879285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 453
Target Start/End: Original strand, 23869931 - 23870005
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatata 453  Q
    |||| ||||||| ||||| ||||||| ||||| ||||| ||| ||||||| ||||| ||||||||||||||||||    
T  23869931 ttttggatgagtggtatggatatttagaaaatatagttaagtagtttaaaaaattgaaaagtgtgaagtaatata 23870005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 460
Target Start/End: Original strand, 40160334 - 40160415
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    |||| |||| |||||||| ||||||||||| | ||||||||| |||||||||||||  ||| || |||||||||||| ||||    
T  40160334 ttttggatgggtagtatggatatttaaaaattttagttgagttgtttaaataattgagaagcgttaagtaatataatatatt 40160415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 428
Target Start/End: Original strand, 42691372 - 42691421
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaa 428  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |||||||    
T  42691372 ttttaaatgagtggtatgaatatttaaaaaatgtagttgagtcgtttaaa 42691421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 464
Target Start/End: Complemental strand, 29681521 - 29681429
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgt 464  Q
    |||||| ||||||||||||  |||| ||||||| ||||||||||| ||||||| |||||||| |||  | | || ||||||||| ||||||||    
T  29681521 tttagaattttagatgagtgatatggatatttataaaatgtagttaagtggttcaaataatttgaatatataaaataatataatatattatgt 29681429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 385 - 488
Target Start/End: Original strand, 46700851 - 46700954
Alignment:
Q  385 atgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccaccc 484  Q
    |||||||||||||||||||| ||||| || |  |||||||||||||||||  ||||||||| || ||||| | |||| || | | |||||||||| || |    
T  46700851 atgagtagtatgaatatttagaaaatataatatagtggtttaaataattgagaagtgtgaaatagtataaagaattaagtgagagccatttatacaactc 46700950  T
Q  485 atat 488  Q
    ||||    
T  46700951 atat 46700954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 488
Target Start/End: Complemental strand, 32485524 - 32485454
Alignment:
Q  418 agtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    ||||||||||||||||   ||| ||||||||||||||||||||||||   ||||||| |||||||| ||||    
T  32485524 agtggtttaaataattaagaagcgtgaagtaatataatgtattatgtgggacccattgataccaccgatat 32485454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 460
Target Start/End: Complemental strand, 41159436 - 41159390
Alignment:
Q  414 gttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    ||||||| |||||||||||||||||||||||| ||||||||| ||||    
T  41159436 gttgagttgtttaaataattggaaagtgtgaaataatataatatatt 41159390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 434
Target Start/End: Original strand, 37626915 - 37626951
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattg 434  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  37626915 atatttaaaaaatatagttgagttgtttaaataattg 37626951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 455
Target Start/End: Complemental strand, 38994894 - 38994818
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    |||| ||||||| ||||| |||||| ||||||||| |||| |  |||||| |||||  |||| ||||||||||||||    
T  38994894 ttttggatgagttgtatggatatttcaaaaatgtaattgaattatttaaaaaattgacaagtatgaagtaatataat 38994818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 358 - 493
Target Start/End: Complemental strand, 39060323 - 39060188
Alignment:
Q  358 taagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgt 457  Q
    ||||||| | ||| |||| ||||||||| ||||  |||| ||||||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||    
T  39060323 taagtgggacctattttaaagttttagaggagtgatatggatatttagaaaatatagttgagtggtttaaataatcgaaaagtgtgaagtaatataatgt 39060224  T
Q  458 attatgtcaaacccatttataccacccatatcggtg 493  Q
    |||||||   ||||||||||||||||||||| ||||    
T  39060223 attatgtgggacccatttataccacccatataggtg 39060188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 392 - 498
Target Start/End: Original strand, 34769574 - 34769680
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcgg 491  Q
    ||||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||   |||| ||||||||||||| || |     
T  34769574 gtatggatatttaaaaaatgtagttgaatggtttaaataattgggaagtgtgaggtaatataatgtattatgtgggacccgtttataccacccaaatgga 34769673  T
Q  492 tggcatg 498  Q
    |||||||    
T  34769674 tggcatg 34769680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 372 - 488
Target Start/End: Original strand, 23089310 - 23089426
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||| |||||||||||||| ||||||||||||||||||||| | |||||| |||||||||||||||| |||||| ||||||||| |||||| |   | ||    
T  23089310 tttaaagttttagatgagtggtatgaatatttaaaaaatgtggatgagtgatttaaataattggaaaatgtgaaataatataatatattatatgggatcc 23089409  T
Q  472 atttataccacccatat 488  Q
    |||||||||| ||||||    
T  23089410 atttataccatccatat 23089426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 4925179 - 4925098
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatata 453  Q
    ||||||||||| || ||||  |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4925179 tttagagttttggaagagtgatatggatatttaaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatata 4925098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 486
Target Start/End: Original strand, 9959322 - 9959415
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||   |||||||||||||||||||    
T  9959322 gtatggatatttagaaaatgtagttgagtagtttaaataattggaaagtgtgaagtagtataaagtattacgt-ggacccatttataccacccat 9959415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 372 - 464
Target Start/End: Original strand, 23090659 - 23090751
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgt 464  Q
    |||| |||||||||||  |||||||||||||||||||| |||   |||||||||||||||||||||||||| || ||||||| ||||||||||    
T  23090659 tttaaagttttagatggatagtatgaatatttaaaaaaggtaagagagtggtttaaataattggaaagtgtaaaataatatattgtattatgt 23090751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 35470271 - 35470383
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    |||||||||||||||||  |||||||| |||  | | || ||||| ||||||| |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  35470271 ataaatttgaggtgtattatgtgattaggtgagacccaaattagaattttagacgagtagtatgaatatttagaaaatatagttgagtagtttaaataat 35470370  T
Q  433 tggaaagtgtgaa 445  Q
    || ||| ||||||    
T  35470371 tgaaaaatgtgaa 35470383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 392 - 488
Target Start/End: Complemental strand, 14913553 - 14913457
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    ||||||||||||| ||||| ||||| ||| ||||||||||||| ||||||| || ||||||||||||||  ||   |||||||||||||||||||||    
T  14913553 gtatgaatatttagaaaatatagtttagtagtttaaataattgaaaagtgtaaaataatataatgtatttagtatgacccatttataccacccatat 14913457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 411 - 501
Target Start/End: Original strand, 35211935 - 35212025
Alignment:
Q  411 gtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcggtggcatgaat 501  Q
    ||||||||||||||||||||| ||| |||||| |||||||||||| || |||||   |||||||||||||||| || | ||||||||||||    
T  35211935 gtagttgagtggtttaaataactgggaagtgtaaagtaatataatataatatgtgggacccatttataccacctatttgggtggcatgaat 35212025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 370 - 460
Target Start/End: Complemental strand, 10523946 - 10523856
Alignment:
Q  370 aatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    |||||| | ||||||||  || ||||||||||||| ||||||||  ||||||||||||||||||  ||||||| || ||||||||||||||    
T  10523946 aatttaaaattttagatcggtggtatgaatatttagaaaatgtaagtgagtggtttaaataattaaaaagtgtaaaataatataatgtatt 10523856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 16280990 - 16280927
Alignment:
Q  390 tagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatata 453  Q
    ||||||||||||||| ||||| |||||| ||| ||| |||||||| ||||||||||||||||||    
T  16280990 tagtatgaatatttagaaaatatagttgtgtgatttgaataattgaaaagtgtgaagtaatata 16280927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 35205223 - 35205137
Alignment:
Q  412 tagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcggtggcatg 498  Q
    ||||||||| |||||||||| ||| |||||| |||||||||||| || |||||   |||||||||||||||| || | |||||||||    
T  35205223 tagttgagttgtttaaataactgggaagtgtaaagtaatataatataatatgtgggacccatttataccacctatttgggtggcatg 35205137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 445
Target Start/End: Original strand, 38697903 - 38697961
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaa 445  Q
    |||||||||| ||||||||||||| |||||||| |||||||||||| || |||||||||    
T  38697903 gagtagtatggatatttaaaaaatttagttgagaggtttaaataatagggaagtgtgaa 38697961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 460
Target Start/End: Complemental strand, 14593962 - 14593889
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    |||| ||||||||||||| |||||||| |||| |||||||||||||||  |  |||||||||||||||| ||||    
T  14593962 gagtggtatgaatatttataaaatgtaattgaatggtttaaataattgagatttgtgaagtaatataatatatt 14593889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 433
Target Start/End: Complemental strand, 7011855 - 7011792
Alignment:
Q  370 aatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataatt 433  Q
    ||||||||||||||||| |||  ||||||||||| |||||||||||||  || |||||||||||    
T  7011855 aatttagagttttagataagtgatatgaatatttgaaaaatgtagttggctgctttaaataatt 7011792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 450
Target Start/End: Complemental strand, 2907861 - 2907804
Alignment:
Q  393 tatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaat 450  Q
    ||||||||||| ||||||| |||||||| |||||||||||| | || |||||||||||    
T  2907861 tatgaatattttaaaaatgaagttgagttgtttaaataattaggaaatgtgaagtaat 2907804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 34383710 - 34383767
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    ||||||| |||||||||||  ||||||||||||||||  |||||| ||||||||||||    
T  34383710 atatttagaaaatgtagttttgtggtttaaataattgagaagtgtaaagtaatataat 34383767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 498
Target Start/End: Original strand, 37902400 - 37902496
Alignment:
Q  403 taaaaaatgtagttgagtggttt-aaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcggtggcatg 498  Q
    |||||||||||||||||| |||| ||||| |||  |||||| |||||||||||| ||| ||||    | ||||||||||||| |||| |||||||||    
T  37902400 taaaaaatgtagttgagtagtttaaaatatttgagaagtgtaaagtaatataatatataatgtgggtctcatttataccaccaatatgggtggcatg 37902496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 38744712 - 38744668
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagtt 416  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||    
T  38744712 tttaaagttttagatgagtggtatgaatatttaaaaaatatagtt 38744668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 434
Target Start/End: Complemental strand, 29812091 - 29812029
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattg 434  Q
    ||||||||||||||||| |  |||||||||||||||||  || |||| | |||||||||||||    
T  29812091 tttagagttttagatgaatgatatgaatatttaaaaaaattaattgaattgtttaaataattg 29812029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 379 - 431
Target Start/End: Original strand, 10923737 - 10923789
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataa 431  Q
    ||||||| |||| ||||||||||| | ||||| |||||||||||||| |||||    
T  10923737 ttttagaggagtggtatgaatattaagaaaatatagttgagtggtttgaataa 10923789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 333 - 452
Target Start/End: Original strand, 30052316 - 30052435
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    ||||||||||||||||| ||||||||| |||| |   ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||    
T  30052316 ataaatttgaggtgtattgtgtgattaggtgggactcaatttagagttttagatgagtagtatggatatttaaaaaatgtagttgattggtttaaataat 30052415  T
Q  433 tggaaagtgtgaagtaatat 452  Q
    |  ||| | |||||||||||    
T  30052416 taaaaaatatgaagtaatat 30052435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 494
Target Start/End: Complemental strand, 780007 - 779885
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||| |||| || |||| ||||| ||||||| ||||| ||||||||||||||||||||| | ||| ||||||||||||||||||||||||| | ||||    
T  780007 tttagaattttggaggagtggtatggatatttagaaaatatagttgagtggtttaaataatggaaaaatgtgaagtaatataatgtattatgtgagaccc 779908  T
Q  472 atttataccacccatatcggtgg 494  Q
    ||||||||||||||||| |||||    
T  779907 atttataccacccatatgggtgg 779885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 5415289 - 5415163
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||| |||| ||||||||||||| ||||||||||||||||  |||||||||||| |||||| |||||||||||| ||||||||  | |||    
T  5415289 tttagagttttagaggagtggtatgaatatttagaaaatgtagttgagtgagttaaataattgggaagtgtaaagtaatataatatattatgtggatccc 5415190  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    |||||||||| |||| | |||||||||    
T  5415189 atttataccatccatttgggtggcatg 5415163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 23560127 - 23560001
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||| |||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||    |||    
T  23560127 tttagagttttagaggagtggcatggatatttagaaaatgtagttgagtggtttaaataattggaaagtgtaaagtaatgtaatatattatgtgggtccc 23560028  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    ||||||||||||||| | |||||||||    
T  23560027 atttataccacccatttgggtggcatg 23560001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 375 - 498
Target Start/End: Original strand, 41377370 - 41377493
Alignment:
Q  375 agagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatt 474  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| ||| |||||||||  ||||| ||||||||||||| |||||||| | |||||||    
T  41377370 agagttttaaaagagtagtatgaatatttaaaaaatgtagttgagtagttaaaataattgagaagtgggaagtaatataatatattatgtaagacccatt 41377469  T
Q  475 tataccacccatatcggtggcatg 498  Q
    ||||| | |||||| |||| ||||    
T  41377470 tatactatccatataggtgacatg 41377493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 372 - 479
Target Start/End: Original strand, 55875827 - 55875934
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||  |  |||||||||||||||| ||||||||   ||||    
T  55875827 tttagagttttagatgagtggtatgaatatttaaaaaatgtagttgagtggtttaagtaattgagagatgtgaagtaatataatttattatgtgggaccc 55875926  T
Q  472 atttatac 479  Q
    ||||||||    
T  55875927 atttatac 55875934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 333 - 460
Target Start/End: Complemental strand, 34388952 - 34388825
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    ||||||||||||||||| ||||||||| |||| ||| |||||||| |||  |||||||  |||||||||||| ||||||| ||| |||||||||||||||    
T  34388952 ataaatttgaggtgtattgtgtgattaggtgggatccaatttagaatttgggatgagtgatatgaatatttagaaaatgtggtttagtggtttaaataat 34388853  T
Q  433 tggaaagtgtgaagtaatataatgtatt 460  Q
    || ||| ||| || ||||||||||||||    
T  34388852 tgaaaaatgtaaaataatataatgtatt 34388825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 372 - 498
Target Start/End: Original strand, 52326994 - 52327120
Alignment:
Q  372 tttagagttttagatgagtagtatgaatattta-aaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacc 470  Q
    ||||||||||| || |||| ||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||  ||||||||   |||    
T  52326994 tttagagttttgga-gagtggtatggatatttagaaaaatgtagttgagtgatttaaataattgaaaagtgtgaagtaatataaaatattatgtgggacc 52327092  T
Q  471 catttataccacccatatcggtggcatg 498  Q
    ||||||||| || ||||| |||||||||    
T  52327093 catttatactactcatatgggtggcatg 52327120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 393 - 487
Target Start/End: Original strand, 7907413 - 7907504
Alignment:
Q  393 tatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccata 487  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||   ||||||||||||||||||||    
T  7907413 tatggatatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaag---tataaagtattatgtgggacccatttataccacccata 7907504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 460
Target Start/End: Original strand, 38567952 - 38568040
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    |||| |||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||    
T  38567952 tttaaagttttagaatagtggtatgaatatttaaaaaatgtagttgagtggtttaaataattgaaaagtaagaagtaatataatatatt 38568040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 486
Target Start/End: Complemental strand, 9268424 - 9268331
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    ||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |   |||||||||||||||||||    
T  9268424 gtatggatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta-ctgggacccatttataccacccat 9268331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 461
Target Start/End: Original strand, 46382002 - 46382091
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    |||| |||||||||| ||| |||||||||||| |||||| |||| ||||||||||||||||||  ||||||||| ||||||||| |||||    
T  46382002 tttaaagttttagataagtggtatgaatatttgaaaaatatagtggagtggtttaaataattgagaagtgtgaactaatataatatatta 46382091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 486
Target Start/End: Original strand, 2681112 - 2681205
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    ||||| || |||| || |||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |   |||||||||||||||||||    
T  2681112 gtatggatgtttagaagatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta-ctgggacccatttataccacccat 2681205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 17476202 - 17476278
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    |||| ||||||| ||||| ||||||| ||||||||||||||| || |||||||||||||| ||||||| ||||||||    
T  17476202 ttttggatgagtggtatggatatttagaaaatgtagttgagttgtctaaataattggaaaatgtgaagaaatataat 17476278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 48263106 - 48262976
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagtt-gagtggtttaaataattggaaagtgtgaagtaa---tataatgtattatgtcaa 467  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||  | || |||||||||||| ||||||| ||||||   |||||| |||||||| |     
T  48263106 tttagagttttagaggagtggtatgaatatttagaaaatgtagttaaaatgatttaaataattgaaaagtgtaaagtaatagtataatatattatgtgag 48263007  T
Q  468 acccatttataccacccatatcggtggcatg 498  Q
     | ||||||||||| |||| | |||||||||    
T  48263006 tctcatttataccatccatttgggtggcatg 48262976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 393 - 460
Target Start/End: Complemental strand, 43355055 - 43354989
Alignment:
Q  393 tatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||||| ||||    
T  43355055 tatgaatatttaaaaaatgtaattgagtggtttaaataatt-gaaggtgtaaagtaatataatatatt 43354989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 461
Target Start/End: Original strand, 19485772 - 19485854
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    |||||||||||| ||| ||||||||| ||||||||  ||| ||||||||||||||  ||||||| || |||||||||||||||    
T  19485772 ttttagatgagtggtacgaatatttagaaaatgtaagtgaatggtttaaataattaaaaagtgtaaaataatataatgtatta 19485854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 454
Target Start/End: Complemental strand, 31648737 - 31648618
Alignment:
Q  333 ataaatttgaggtgtatcgtgtgattaagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataat 432  Q
    ||||||||||||| ||| ||| |||||||  | |  ||||||| |||||||||||||||||||||  ||||| |||||||| |  |||||||||||||||    
T  31648737 ataaatttgaggtatattgtgcgattaaggtggacgtaatttatagttttagatgagtagtatga--atttagaaaatgtaatatagtggtttaaataat 31648640  T
Q  433 tggaaagtgtgaagtaatataa 454  Q
    | || ||||| || ||||||||    
T  31648639 tagatagtgtaaaataatataa 31648618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 398 - 486
Target Start/End: Complemental strand, 2714309 - 2714221
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    ||||||||||||| ||||| | || |||||||||||||||||| |||| |||||||| |||||| || | | |||||||||| ||||||    
T  2714309 atatttaaaaaatatagttaaatgatttaaataattggaaagtatgaaataatataaagtattacgtgagatccatttatacaacccat 2714221  T

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Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 374 - 461
Target Start/End: Complemental strand, 55876107 - 55876020
Alignment:
Q  374 tagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    ||||||||| | ||||  ||||| ||||||| ||| ||||||||| | |||||||||||||  ||||||||||||||||||| |||||    
T  55876107 tagagttttgggtgaggggtatggatatttagaaagtgtagttgaatagtttaaataattgagaagtgtgaagtaatataatatatta 55876020  T

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Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 381 - 434
Target Start/End: Complemental strand, 37556342 - 37556289
Alignment:
Q  381 ttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattg 434  Q
    |||||||||||||||| |||||| |||||| ||||||||| |||||||||||||    
T  37556342 ttagatgagtagtatggatattttaaaaatatagttgagtagtttaaataattg 37556289  T

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Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 372 - 424
Target Start/End: Original strand, 4974605 - 4974657
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtt 424  Q
    ||||||||||| || |||| ||||||||||||| ||||| |||||||||||||    
T  4974605 tttagagtttttgaggagtggtatgaatatttagaaaatatagttgagtggtt 4974657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 488
Target Start/End: Complemental strand, 43264517 - 43264451
Alignment:
Q  422 gtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    |||||||||||||  ||||||||||||||||||| ||||| || |   ||||||||||||| |||||    
T  43264517 gtttaaataattgagaagtgtgaagtaatataatatattaggtgaggtccatttataccactcatat 43264451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 460
Target Start/End: Original strand, 30875381 - 30875441
Alignment:
Q  400 atttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    ||||| ||||| ||||| |||| ||||||||||||| |||| | || ||||||||||||||    
T  30875381 atttagaaaatatagtttagtgatttaaataattgggaagtttaaaataatataatgtatt 30875441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 372 - 479
Target Start/End: Complemental strand, 47394484 - 47394377
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||| ||||||| |||| |||||||||||||||||||||||  |||| |||||||||||||| ||||||||||||||||||||||||||||  |||||    
T  47394484 tttagacttttagaagagtggtatgaatatttaaaaaatgtagacgagtagtttaaataattgggaagtgtgaagtaatataatgtattatgtggaaccc 47394385  T
Q  472 atttatac 479  Q
    ||||||||    
T  47394384 atttatac 47394377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 372 - 494
Target Start/End: Original strand, 23570992 - 23571114
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    ||||||||||| || |||| ||||| ||||||||||||| ||||||||| ||||||||||| | ||| |||||||||||||||||||||||||   ||||    
T  23570992 tttagagttttggaggagtggtatggatatttaaaaaatatagttgagttgtttaaataatggaaaaatgtgaagtaatataatgtattatgtgggaccc 23571091  T
Q  472 atttataccacccatatcggtgg 494  Q
    ||||||||||||||||| |||||    
T  23571092 atttataccacccatatgggtgg 23571114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 377 - 488
Target Start/End: Complemental strand, 51613362 - 51613251
Alignment:
Q  377 agttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccattta 476  Q
    |||||| || |||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||   | |||||||    
T  51613362 agttttggaagagtggtatgagtatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataaattattatgtgggatccattta 51613263  T
Q  477 taccacccatat 488  Q
    |||||| |||||    
T  51613262 taccactcatat 51613251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 7900268 - 7900142
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||| ||||||||    |||    
T  7900268 tttagagttttagaggagtggtatggatatttagaaaatgtagttgagtggtttaaataattgggaagtataaagtaatataatatattatgtgggtccc 7900169  T
Q  472 atttataccacccatatcggtggcatg 498  Q
    |||||||| | |||| | |||||||||    
T  7900168 atttatacgatccatttaggtggcatg 7900142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 372 - 486
Target Start/End: Original strand, 19993361 - 19993475
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||||||||||||| |||| ||||| ||||||| ||||| ||||||||||||||||||||||  ||||||| |||||||||||| ||||||||  | |||    
T  19993361 tttagagttttagaggagtggtatggatatttagaaaatatagttgagtggtttaaataattaaaaagtgtaaagtaatataatatattatgtggatccc 19993460  T
Q  472 atttataccacccat 486  Q
    || ||||||||||||    
T  19993461 atctataccacccat 19993475  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 375 - 482
Target Start/End: Original strand, 10574351 - 10574458
Alignment:
Q  375 agagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatt 474  Q
    ||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||||  || |||||||||||||| | ||||||||  ||| ||||    
T  10574351 agagtattagatgagtagtatgaatatttaaaaaatataattgagtgatttaaataattgagaaatgtgaagtaatatattatattatgtggaactcatt 10574450  T
Q  475 tataccac 482  Q
    ||||||||    
T  10574451 tataccac 10574458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 372 - 488
Target Start/End: Original strand, 50428463 - 50428579
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    ||||||||||| || |||| ||||| ||||||| ||||| |||||||||| ||||||||||||  ||||||||||||||||||| ||||  || | | ||    
T  50428463 tttagagttttggaggagtggtatggatatttagaaaatatagttgagtgatttaaataattgagaagtgtgaagtaatataatttattgcgtgagatcc 50428562  T
Q  472 atttataccacccatat 488  Q
    |||||||||||||||||    
T  50428563 atttataccacccatat 50428579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 498
Target Start/End: Complemental strand, 43496490 - 43496384
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcgg 491  Q
    ||||| ||||||||||||||||||||| | |||||||||||||  |||||||| |||||||||||||||||||   |||| ||||||||| ||| || ||    
T  43496490 gtatggatatttaaaaaatgtagttgaatagtttaaataattgagaagtgtgaggtaatataatgtattatgtgggacccgtttataccatccaaatggg 43496391  T
Q  492 tggcatg 498  Q
    |||||||    
T  43496390 tggcatg 43496384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 494
Target Start/End: Complemental strand, 37457750 - 37457614
Alignment:
Q  358 taagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgt 457  Q
    ||||||| | ||| |||| |||||| || |||| ||||| ||||||| ||||| |||||||||||||| ||||||||  ||||||||| ||||||| |||    
T  37457750 taagtgggacctattttaaagttttggaagagtggtatgtatatttagaaaatatagttgagtggttttaataattgagaagtgtgaaataatatattgt 37457651  T
Q  458 attatgtcaaacccatttataccacccatatcggtgg 494  Q
    |||| ||   |||||||||||||||| |||| |||||    
T  37457650 attacgtgggacccatttataccacctatatgggtgg 37457614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 372 - 498
Target Start/End: Original strand, 7167982 - 7168108
Alignment:
Q  372 tttagagttttagatgagtagtatgaatattta-aaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacc 470  Q
    ||||||||||| || |||| || || ||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||||||  |||||||| | |||    
T  7167982 tttagagttttgga-gagtcgtgtggatatttagaaaaatgtagttgggtggtttaaataattggaaaatgtaaagtaatataaaatattatgtgagacc 7168080  T
Q  471 catttataccacccatatcggtggcatg 498  Q
    ||||||||| || ||||| |||| ||||    
T  7168081 catttatactactcatatgggtgacatg 7168108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 392 - 486
Target Start/End: Original strand, 46823637 - 46823730
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    ||||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  |   |||||||||||||||||||    
T  46823637 gtatggatgtttagaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaagtatta-ctgggacccatttataccacccat 46823730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 358 - 455
Target Start/End: Original strand, 19322791 - 19322888
Alignment:
Q  358 taagtggaatctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    ||||||| ||||| ||||||||||| ||  ||| ||||| ||||||||||||||||||||| |||||||||||||||  |||| || |||||||||||    
T  19322791 taagtgggatctattttagagttttggagaagtggtatggatatttaaaaaatgtagttgaatggtttaaataattgagaagtatgtagtaatataat 19322888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 387 - 454
Target Start/End: Original strand, 26707124 - 26707191
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataa 454  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  26707124 gagtggtatgaatatttagaaaatgtagttgaatggtttaaataattgaaaagtgtgaactaatataa 26707191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 372 - 488
Target Start/End: Complemental strand, 1035857 - 1035741
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    |||| |||||| || |||| ||||| ||||||| ||||| ||||| |||||||||||||||||  ||||||||| ||||||| |||||||  |   ||||    
T  1035857 tttaaagttttggaagagtggtatgtatatttagaaaatatagtttagtggtttaaataattgagaagtgtgaaataatatattgtattacatgggaccc 1035758  T
Q  472 atttataccacccatat 488  Q
    || ||||||||||||||    
T  1035757 atatataccacccatat 1035741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 16680022 - 16679939
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    |||||||||||  |||||| ||||| |||||| ||||||||| |||| ||||| |||||||||  |||||||||||||||||||    
T  16680022 tttagagttttgaatgagtggtatgtatatttgaaaaatgtaattgaatggttaaaataattgagaagtgtgaagtaatataat 16679939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 27641631 - 27641543
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    |||| |||||||||||||| ||||| ||||||  ||||| |||||| ||||||||||||| ||  |||| |||| ||||||||||||||    
T  27641631 tttaaagttttagatgagtggtatggatatttggaaaatttagttgggtggtttaaataactgagaagtatgaactaatataatgtatt 27641543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 366 - 453
Target Start/End: Original strand, 8848117 - 8848203
Alignment:
Q  366 atctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatata 453  Q
    ||||| ||||||||||| |||| ||| |||| |||||| || | ||||||||||| ||||||||| ||||||| |||||| |||||||    
T  8848117 atctattttagagtttttgatgggtaatatggatattttaata-tgtagttgagttgtttaaatatttggaaaatgtgaaataatata 8848203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 443
Target Start/End: Complemental strand, 19466399 - 19466340
Alignment:
Q  384 gatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtg 443  Q
    ||||||||||||  ||||||||||||| |||| |||| |||||||||||||  |||||||    
T  19466399 gatgagtagtattgatatttaaaaaatatagtggagtagtttaaataattgagaagtgtg 19466340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 29058592 - 29058647
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattg 434  Q
    ||||||| |||| ||||||||||||||| |||||  ||||||| ||||||||||||    
T  29058592 ttttagaagagtggtatgaatatttaaagaatgtgattgagtgatttaaataattg 29058647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 27541031 - 27540987
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagtt 416  Q
    ||||||||||||||||||   |||||||||||| |||||||||||    
T  27541031 tttagagttttagatgagcgatatgaatatttataaaatgtagtt 27540987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 372 - 488
Target Start/End: Original strand, 14657497 - 14657612
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccc 471  Q
    ||||||||||| ||  |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   | ||    
T  14657497 tttagagttttggagcagtgatatgaatatttagaaaatgtagttgagtggtttaaataattggaaagtgtgaaataatataatgtattatgtgtga-cc 14657595  T
Q  472 atttataccacccatat 488  Q
    |||||||||||||||||    
T  14657596 atttataccacccatat 14657612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 8322157 - 8322240
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataat 455  Q
    ||||||||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  8322157 tttagagttttggatgagtggtatgaatatttgaaaaatgtaattgagtggtttaaataattgaaaagtgtgaagtaatataat 8322240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 398 - 494
Target Start/End: Complemental strand, 6859078 - 6858982
Alignment:
Q  398 atatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcggtgg 494  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||| ||   ||||||||||||||||||||| |||||    
T  6859078 atatttagaaaatatagtttagtggtttaaataattgggaagtgtgaagtaatatattgtattacgtgggacccatttataccacccatatgggtgg 6858982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 379 - 498
Target Start/End: Original strand, 37069893 - 37070013
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaa-tgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttat 477  Q
    |||||||||||||||||| |||||||||||| ||||   ||||||||||||||||||| |||||| || ||||||| | ||||||||   ||||||||||    
T  37069893 ttttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatattatgtgggacccatttat 37069992  T
Q  478 accacccatatcggtggcatg 498  Q
    |||||||| || |||||||||    
T  37069993 accacccaaatgggtggcatg 37070013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 498
Target Start/End: Original strand, 39375713 - 39375819
Alignment:
Q  392 gtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcgg 491  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||| | | || |||||||| || |||||| |     
T  39375713 gtatggatatttaaaaaatatagttgagtggtttaaataattggaaaatatgaagtaatataatatattatatgagactcatttatatcatccatatgga 39375812  T
Q  492 tggcatg 498  Q
    |||||||    
T  39375813 tggcatg 39375819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 379 - 488
Target Start/End: Complemental strand, 9104676 - 9104567
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttata 478  Q
    ||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||  || |||||| ||||||||  |||||  | | |||||||||||    
T  9104676 ttttagaagagtggtatagatatttaaaaaatgtagttgagtggtttaaataattgagaattgtgaaataatataaaatattagatgagacccatttata 9104577  T
Q  479 ccacccatat 488  Q
    ||||||||||    
T  9104576 ccacccatat 9104567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 372 - 488
Target Start/End: Original strand, 32914444 - 32914560
Alignment:
Q  372 tttagagttttagatgagtagtatgaatattta-aaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacc 470  Q
    ||||||||||| || |||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||  |||||| |   |||    
T  32914444 tttagagtttttga-gagtggtatggatatttagaaaaatgtagttgagtggtttaaataattgaaaagtgtgaagtaatataaaatattatatgggacc 32914542  T
Q  471 catttataccacccatat 488  Q
    ||||||||| || |||||    
T  32914543 catttatactactcatat 32914560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 501
Target Start/End: Original strand, 18565739 - 18565854
Alignment:
Q  386 tgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccaccca 485  Q
    ||||| ||||| |||||||||||||||||||||||  ||||||||||||  ||||   ||||||||||||||||||| | | ||||||||||||||| ||    
T  18565739 tgagtggtatggatatttaaaaaatgtagttgagtcatttaaataattgagaagtcgaaagtaatataatgtattatatgagacccatttataccactca 18565838  T
Q  486 tatcggtggcatgaat 501  Q
    ||| | || |||||||    
T  18565839 tatggatgacatgaat 18565854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 386 - 461
Target Start/End: Original strand, 40095790 - 40095865
Alignment:
Q  386 tgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatta 461  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||| |||||    
T  40095790 tgagtggtatgaatatttaaaaaatgtagttgagtagtttaaataattgagaagtgtaaagtaatataatatatta 40095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 372 - 453
Target Start/End: Complemental strand, 33386781 - 33386700
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatata 453  Q
    |||||||||||||| |||| ||||||||||||| |||||| | ||||||||||||||||||||| || ||| ||||||||||    
T  33386781 tttagagttttagaggagtggtatgaatatttagaaaatgcaattgagtggtttaaataattgggaattgtaaagtaatata 33386700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 387 - 487
Target Start/End: Complemental strand, 5147201 - 5147101
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    |||||||||||||||||| ||||||||||||| || |||||||||| || ||||||||  ||||||||| ||||  ||  |||||||| |||||||||||    
T  5147201 gagtagtatgaatatttagaaaatgtagttgaatgatttaaataatagggaagtgtgagataatataatatattcagtggaacccattcataccacccat 5147102  T
Q  487 a 487  Q
    |    
T  5147101 a 5147101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 366 - 488
Target Start/End: Original strand, 3739843 - 3739965
Alignment:
Q  366 atctaatttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtc 465  Q
    ||||| |||| |||||||||||| | |||| |||||||| || |||||| ||| || |||||||||||| ||| | | || ||||||||||||||||||     
T  3739843 atctactttaaagttttagatgaatggtataaatatttagaatatgtagatgaatgatttaaataattgaaaaatataaaataatataatgtattatgtg 3739942  T
Q  466 aaacccatttataccacccatat 488  Q
    | ||| |||||||||| ||||||    
T  3739943 agacctatttataccatccatat 3739965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 4897248 - 4897342
Alignment:
Q  394 atgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||| |||| |||||| |   | |||||||||||||| ||||    
T  4897248 atgaatatttagaaaatgtagttgagtagtttaaataattgaaaaatgtgaagtaatgtaatatattatatgtgatccatttataccacctatat 4897342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 4944642 - 4944736
Alignment:
Q  394 atgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatat 488  Q
    ||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||| |||| |||||| |   | |||||||||||||| ||||    
T  4944642 atgaatatttagaaaatgtagttgagtagtttaaataattgaaaaatgtgaagtaatgtaatatattatatgtgatccatttataccacctatat 4944736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 460
Target Start/End: Original strand, 3739486 - 3739559
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtatt 460  Q
    ||||| |||| ||||||| ||||||||||| |||||||||||||||  ||||||||||  ||||||||||||||    
T  3739486 gagtattatggatatttagaaaatgtagttaagtggtttaaataataagaaagtgtgagataatataatgtatt 3739559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 418 - 498
Target Start/End: Original strand, 7395456 - 7395536
Alignment:
Q  418 agtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcggtggcatg 498  Q
    ||||||||||||||||| |||||||||||||||||||  ||||| ||   |||||||||||| ||||||||  ||||||||    
T  7395456 agtggtttaaataattgaaaagtgtgaagtaatataaaatattaggtgggacccatttatactacccatatgagtggcatg 7395536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 494
Target Start/End: Original strand, 38609918 - 38610025
Alignment:
Q  387 gagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccat 486  Q
    |||||||||| ||||||| ||||| || ||||||||||||||||||  |||||||| || ||||||||| ||||  || | | |||||||||||| | ||    
T  38609918 gagtagtatggatatttagaaaatataattgagtggtttaaataataagaaagtgtaaaataatataatatattcagtgagatccatttataccatcaat 38610017  T
Q  487 atcggtgg 494  Q
    || |||||    
T  38610018 ataggtgg 38610025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 13250551 - 13250507
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagtt 416  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||    
T  13250551 tttagagttttagatgagtggtatgaatatttataaaatgtagtt 13250507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 3384785 - 3384722
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgt 442  Q
    |||| |||||||  |||||||||||| ||||||||||||| | |||||||||||| ||||||||    
T  3384785 tttttgatgagtgatatgaatatttataaaatgtagttgaattgtttaaataattagaaagtgt 3384722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 494
Target Start/End: Original strand, 9993023 - 9993101
Alignment:
Q  416 tgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacccatttataccacccatatcggtgg 494  Q
    |||||||||||||||||| ||||||||||| ||||||||  |||||  | |||| |||||||||||  ||||| |||||    
T  9993023 tgagtggtttaaataattagaaagtgtgaaataatataaaatattacataaaactcatttataccattcatataggtgg 9993101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 441
Target Start/End: Original strand, 8443222 - 8443278
Alignment:
Q  385 atgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtg 441  Q
    |||||||||||  ||||||||||||| || |||||| |||||||||||| |||||||    
T  8443222 atgagtagtattgatatttaaaaaatataattgagtagtttaaataattagaaagtg 8443278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 427
Target Start/End: Complemental strand, 37258358 - 37258309
Alignment:
Q  379 ttttagatgagtagtatgaatatttaa-aaaatgtagttgagtggtttaa 427  Q
    ||||||| |||| |||||||||||||| ||||||| ||||||||||||||    
T  37258358 ttttagaagagtggtatgaatatttaagaaaatgtggttgagtggtttaa 37258309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 373 - 486
Target Start/End: Original strand, 56574 - 56687
Alignment:
Q  373 ttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaaccca 472  Q
    ||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||  |||||| |||||||||||| ||||||||    ||||    
T  56574 ttagagttttagaggagtggtatggatatttagaaaatgtagttgagtggtttaaataattgagaagtgtaaagtaatataatatattatgtgggtccca 56673  T
Q  473 tttataccacccat 486  Q
    ||||||||| ||||    
T  56674 tttataccatccat 56687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 13914 - 13787
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaa-tgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacc 470  Q
    |||| |||||||||||||||||||| |||||||||||| ||||   ||||||||||||||||||| |||||| || ||||||| | ||||||||   |||    
T  13914 tttaaagttttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatattatgtgggacc 13815  T
Q  471 catttataccacccatatcggtggcatg 498  Q
    ||||||||||||||| || |||||||||    
T  13814 catttataccacccaaatgggtggcatg 13787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 372 - 498
Target Start/End: Complemental strand, 21651 - 21524
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaa-tgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtattatgtcaaacc 470  Q
    |||| |||||||||||||||||||| |||||||||||| ||||   ||||||||||||||||||| |||||| || ||||||| | ||||||||   |||    
T  21651 tttaaagttttagatgagtagtatggatatttaaaaaaatgtaagagagtggtttaaataattgggaagtgtaaaataatatattatattatgtgggacc 21552  T
Q  471 catttataccacccatatcggtggcatg 498  Q
    ||||||||||||||| || |||||||||    
T  21551 catttataccacccaaatgggtggcatg 21524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 372 - 459
Target Start/End: Original strand, 37939 - 38026
Alignment:
Q  372 tttagagttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaatataatgtat 459  Q
    |||| ||||||||| | ||||||| |||||||||||||||||   |||||||||||||||||||||||||| || ||||||| |||||    
T  37939 tttaaagttttagacgggtagtataaatatttaaaaaatgtaagagagtggtttaaataattggaaagtgtaaaataatatattgtat 38026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 450
Target Start/End: Original strand, 198007 - 198078
Alignment:
Q  379 ttttagatgagtagtatgaatatttaaaaaatgtagttgagtggtttaaataattggaaagtgtgaagtaat 450  Q
    ||||||||||||||||| ||||||||||| || || ||||||  ||||||||| ||  ||||||||| ||||    
T  198007 ttttagatgagtagtataaatatttaaaatatataattgagttatttaaataactgtgaagtgtgaaataat 198078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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