View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_13 (Length: 476)
Name: NF13900_high_13
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 233 - 462
Target Start/End: Original strand, 33621445 - 33621685
Alignment:
| Q |
233 |
ggttactggattggttctaagtttactatacaaacataatgtatgtttccatactcaaaaacattaaattaaggtgttgattttagctctcttgctagtg |
332 |
Q |
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| T |
33621445 |
ggttactggattggttctaagtttactatacaaacataatgtatgtttccatactcaaaaacattaaattaaggtgttgattttagctctcttgctagtg |
33621544 |
T |
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| Q |
333 |
attggatgcaaattattgcaaagggactgaatgtttatgatggtttgtttgatagtaat-----------tttcattgttcataccgataatgatgtatt |
421 |
Q |
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| T |
33621545 |
gttggatacaaattattgcaaagggactgaatgtttatgatggtttgtttgatagtagtaattttcattgtttcattgttcataccgataatgatgtatt |
33621644 |
T |
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| Q |
422 |
ttattggtcatgaatatgactcttcacatttggtcaaagtt |
462 |
Q |
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| T |
33621645 |
ttattggtcatgaatatgactcttcacatttggtcaaagtt |
33621685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 33621227 - 33621407
Alignment:
| Q |
15 |
gggcaaagatggttgcttgtgtggtgcgacaaacttctccatcatctgcttgaggatcttctaacctagttgattgatactaccttctggcatctttgca |
114 |
Q |
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| T |
33621227 |
gggcaaagatggttgcttgtgtggtgcgacaaacttctccatcatctgcttcaggatcttctaacctagttgattgatactaccttctggcatctttgca |
33621326 |
T |
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| Q |
115 |
cacacatgaagctcataggnnnnnnngagtgtttggactgaact-tgttctaatttgttcatacatagtcatgtatgttctc |
195 |
Q |
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| T |
33621327 |
cacacatgaagctcatagg-aaaaaagagtgtttggactgaactgtgttctaatttgttcatacatagtcatgtatgttctc |
33621407 |
T |
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