View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_14 (Length: 440)
Name: NF13900_high_14
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 23343244 - 23343665
Alignment:
| Q |
1 |
gcataaatttgcacaccagaactatcaatgagttcataccaatgatacacttctttgtcagtcatgacatattcatatctttgcttttgttttaacggtt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23343244 |
gcataaatttgcacaccagagctatcaatgagttcataccaatgatacacttctttgtcagtcatgacaaattcatatctttgcttttgttttaacggtt |
23343343 |
T |
|
| Q |
101 |
gtattggatatccggtaaaagtttgaccattccatgatcctattctcaatcttatcacagatcccttcataacaactatttgaggatatcctctaatgtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23343344 |
gtattggatatccggtaaaagtttgaccattccatgatcctattctcaatcttatcacagatcccttcataacaactatttgaggatatcctctaatgtc |
23343443 |
T |
|
| Q |
201 |
aatatttaccgaataatctcccttagctggatcatttgaacttttccacgacgaatagaacttgttttgaccggctactaagttccatccaagcttcatt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
23343444 |
aatatttaccgaataatctcccttagctggatcatttgaacttttccacgacgaatagaacttgttttgaccggttactaagttccatccaagcttcatt |
23343543 |
T |
|
| Q |
301 |
cctggcaaaaatgtatcacttggatagtcaaaactctgccacaaaatattgtttgccgaatttttcaacacaagatttccattgtccaatagctgtgcag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23343544 |
cctggcaaaaatgtatcacttggatagtcaaaactctgccacaaaatattgtttgccgaatttttcaacacaagatttccattttccaatagctgtgcag |
23343643 |
T |
|
| Q |
401 |
atattgaattatttgccggtct |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
23343644 |
atattgaattatttgccggtct |
23343665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 23383999 - 23383578
Alignment:
| Q |
1 |
gcataaatttgcacaccagaactatcaatgagttcataccaatgatacacttctttgtcagtcatgacatattcatatctttgcttttgttttaacggtt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
23383999 |
gcataaatttgcacaccagagctatcaatgagttcataccaatgatacacttctttgtcagtcatgacaaattcatatctttgcttttgttttaacggtt |
23383900 |
T |
|
| Q |
101 |
gtattggatatccggtaaaagtttgaccattccatgatcctattctcaatcttatcacagatcccttcataacaactatttgaggatatcctctaatgtc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23383899 |
gtattggatatccggtaaaagtttgaccattccatgatcctattctcaatcttatcacagatcccttcataacaactatttgaggatatcctctaatgtc |
23383800 |
T |
|
| Q |
201 |
aatatttaccgaataatctcccttagctggatcatttgaacttttccacgacgaatagaacttgttttgaccggctactaagttccatccaagcttcatt |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
23383799 |
aatattaaccgaataatctcccttagctggatcatttgaacttttccacgacgaatagaacttgttttgaccggttactaagttccatccaagcttcatt |
23383700 |
T |
|
| Q |
301 |
cctggcaaaaatgtatcacttggatagtcaaaactctgccacaaaatattgtttgccgaatttttcaacacaagatttccattgtccaatagctgtgcag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23383699 |
cctggcaaaaatgtatcacttggatagtcaaaactctgccacaaaatattgtttgccgaatttttcaacacaagatttccataatccaatagctgtgcag |
23383600 |
T |
|
| Q |
401 |
atattgaattatttgccggtct |
422 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
23383599 |
atattgaattatttgccggtct |
23383578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 22 - 413
Target Start/End: Original strand, 23287781 - 23288172
Alignment:
| Q |
22 |
ctatcaatgagttcataccaatgatacacttctttgtcagtcatgacatattcatatctttgcttttgttttaacggttgtattggatatccggtaaaag |
121 |
Q |
| |
|
||||||| || |||||| | ||||||||||||||||||||| |||||| ||||| || ||||||| | ||| || |||||| |||||||||||||||||| |
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|
| T |
23287781 |
ctatcaacgacttcatatcgatgatacacttctttgtcagttatgacaaattcaaatatttgcttctctttcaatggttgtgttggatatccggtaaaag |
23287880 |
T |
|
| Q |
122 |
tttgaccattccatgatcctattctcaatcttatcacagatcccttcataacaactatttgaggatatcctctaatgtcaatatttaccgaataatctcc |
221 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| | || |||||||| | ||||| ||| |||||||||| | ||||| | ||||| ||||| |
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|
| T |
23287881 |
agcgaccattccatgatcctactctcaattttatggcggaccccttcattataactacttgtggatatcctcggaggtcaacaccactagaatattctcc |
23287980 |
T |
|
| Q |
222 |
cttagctggatcatttgaacttttccacgacgaatagaacttgttttgaccggctactaagttccatccaagcttcattcctggcaaaaatgtatcactt |
321 |
Q |
| |
|
||| |||||||||| || |||||||||||| || | | ||||||| |||| | ||||||||||||||||||||||||||| |||| |||||||||| | |
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| T |
23287981 |
ctttgctggatcatctgtacttttccacgatgattgaatcttgtttagaccagttactaagttccatccaagcttcattcccggcagtaatgtatcacat |
23288080 |
T |
|
| Q |
322 |
ggatagtcaaaactctgccacaaaatattgtttgccgaatttttcaacacaagatttccattgtccaatagctgtgcagatattgaattatt |
413 |
Q |
| |
|
||||| |||||||||||||||||||||| || | |||||||||||||| |||||| ||||||| ||||| ||| |||||||||||| |
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|
| T |
23288081 |
ggataatcaaaactctgccacaaaatatagtccttcccatttttcaacacaaaatttcccgtgtccaagagctgagcatttattgaattatt |
23288172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 22 - 413
Target Start/End: Complemental strand, 23391607 - 23391216
Alignment:
| Q |
22 |
ctatcaatgagttcataccaatgatacacttctttgtcagtcatgacatattcatatctttgcttttgttttaacggttgtattggatatccggtaaaag |
121 |
Q |
| |
|
||||||| || |||||| | ||||||||||||||||||||| |||||| ||||| || ||||||| | |||||| |||||| |||||||||| ||||||| |
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|
| T |
23391607 |
ctatcaacgacttcatatcgatgatacacttctttgtcagttatgacaaattcaaatatttgcttcttttttaatggttgtgttggatatcccgtaaaag |
23391508 |
T |
|
| Q |
122 |
tttgaccattccatgatcctattctcaatcttatcacagatcccttcataacaactatttgaggatatcctctaatgtcaatatttaccgaataatctcc |
221 |
Q |
| |
|
|||| ||||| ||||||| ||||||| |||| | || |||||||| | ||||| ||| |||||||||| | ||||| | ||||| ||||| |
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|
| T |
23391507 |
agcgaccgttccacgatcctactctcaattttatggcggaccccttcattataactacttggggatatcctcggaggtcaacaccactagaatattctcc |
23391408 |
T |
|
| Q |
222 |
cttagctggatcatttgaacttttccacgacgaatagaacttgttttgaccggctactaagttccatccaagcttcattcctggcaaaaatgtatcactt |
321 |
Q |
| |
|
||| |||||||||| || |||||||||||| || | | ||||||| |||| | ||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
23391407 |
ctttgctggatcatctgtacttttccacgatgattgaatcttgtttagaccagttactaagttccatccaagcttcattcccggcagtaatgtatcacac |
23391308 |
T |
|
| Q |
322 |
ggatagtcaaaactctgccacaaaatattgtttgccgaatttttcaacacaagatttccattgtccaatagctgtgcagatattgaattatt |
413 |
Q |
| |
|
||||| |||||||||||||||||||| | || | ||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |
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|
| T |
23391307 |
ggataatcaaaactctgccacaaaatgtagtccttcccatttttcaacacaagatttcccgtgtccaagagctgtgcatttattgaattatt |
23391216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 344
Target Start/End: Complemental strand, 23358299 - 23358237
Alignment:
| Q |
282 |
gttccatccaagcttcattcctggcaaaaatgtatcacttggatagtcaaaactctgccacaa |
344 |
Q |
| |
|
|||||| ||||||||||||||||| | || ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
23358299 |
gttccaaccaagcttcattcctggaagaattgtatcactaggatagtcaaagctctgccacaa |
23358237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 31694836 - 31694776
Alignment:
| Q |
285 |
ccatccaagcttcattcctggcaaaaatgtatcacttggatagtcaaaactctgccacaaa |
345 |
Q |
| |
|
|||||| | |||||| |||||||||| |||||||| ||||||||||| || ||||||||| |
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|
| T |
31694836 |
ccatcctaacttcatccctggcaaaattgtatcacagggatagtcaaagctttgccacaaa |
31694776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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