View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_15 (Length: 432)
Name: NF13900_high_15
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 15 - 414
Target Start/End: Original strand, 10977116 - 10977541
Alignment:
| Q |
15 |
tcttagtatgcaagttaggaaacatttcccttagaggggccgttgtttattttct------------------cagatgccaaatagatggaggtgttct |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
10977116 |
tcttagtatgcaagttaggaaacatttcccttagaggggccgttgtttattttctgaagtattttatttttcccagatgccaaatagatggaggtgttct |
10977215 |
T |
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| Q |
97 |
ttgtaaaatctatttgccaaagaaatcta--------tttgtagaactttgatatnnnnnnnnnnnnnnnttacaatatttgcattataaacaaaactgc |
188 |
Q |
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|||||||||||||| ||||||||||| | || | |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10977216 |
ttgtaaaatctattcgccaaagaaattgaggaatacattaattgaactttgatataagaaaataaaataattacaatatttgcattataaacaaaactgc |
10977315 |
T |
|
| Q |
189 |
caaagaattgagaatcgcttttctctatgatatcatgattaatggcaaaatcagaactgaaattttcataggaaggatcgtcctcattccttgggtatca |
288 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||||||||| ||||| ||| |||| ||||||||||||||| |
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| T |
10977316 |
caaagaattgagaatcgcttttctacatgatatcatgattcatgtcagaatcagaactgaaattttcaacggaagaatcatccttattccttgggtatca |
10977415 |
T |
|
| Q |
289 |
ctctgataacatgtgaagaatcatgggatgagacttgagagggttataaatcatactcataagagagagaaa------atatcaataatcatgaggtaaa |
382 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| |||||||| |||||||| |
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| T |
10977416 |
ctctgataacatgtgaagaatcatggga-------tgagagggttataaatcatactcttaagagagagaaagggagcatatgaataatcacgaggtaaa |
10977508 |
T |
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| Q |
383 |
agctcaaaaggaatca-ttttgattgataaaag |
414 |
Q |
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|||||||||||| | | |||||||||||||||| |
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| T |
10977509 |
agctcaaaaggagtaatttttgattgataaaag |
10977541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 172 - 414
Target Start/End: Complemental strand, 11030679 - 11030427
Alignment:
| Q |
172 |
attataaacaaaactgccaaagaattgagaatcgcttttctctatgatatcatgattaatggcaaaatcagaactgaaattttcataggaaggatcgtcc |
271 |
Q |
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||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||| ||| | |
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| T |
11030679 |
attataaacaaaactgccaaagacttcagaatcgcttttctccatgatatcatgatccgtggcagaatcagaactgaaattttcatcagaagcatcatgt |
11030580 |
T |
|
| Q |
272 |
tcattccttgggtatcactctga----taacatgtgaagaatcatgggatgagacttgagagggttataaatcatactcataagagagagaaa------a |
361 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11030579 |
tcattccttgggtatcaatctgataattaacatgtgaagaatcatgggatgagacttgagagggttataaatcatactcataagagagagaaagacagca |
11030480 |
T |
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| Q |
362 |
tatcaataatcatgaggtaaaagctcaaaaggaatcattttgattgataaaag |
414 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11030479 |
tatgaataatcatgaggtaaaagctcaaaaggaatcattttgattgataaaag |
11030427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 159 - 393
Target Start/End: Original strand, 10931878 - 10932111
Alignment:
| Q |
159 |
ttacaatatttgcattataaacaaaactgccaaagaattgagaatcgcttttctctatgatatcatgattaatggcaaaatcagaactgaaattttcata |
258 |
Q |
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||||||||||| ||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
10931878 |
ttacaatatttttattataaacaaaactgccaaagacttcagaatcgcttttctccatgatatcatgatccgtggcagaatcagaactgaaattttcatc |
10931977 |
T |
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| Q |
259 |
ggaaggatcgtcctcattccttgggtatcactctgataacatgtgaagaatcatgggatgagacttgagagggttataaatcatactcataagagagaga |
358 |
Q |
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|||| |||| ||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10931978 |
agaagcgtcgtgttcattccttggatatccctctgctaacatgtgaagaatcatggga-------tgagagggttataaatcatactcataagagagaga |
10932070 |
T |
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| Q |
359 |
aa------atatcaataatcatgaggtaaaagctcaaaagg |
393 |
Q |
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|| |||| ||| || ||||||||||||||||||||| |
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| T |
10932071 |
aagcgagcatatgaattataatgaggtaaaagctcaaaagg |
10932111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 10931706 - 10931831
Alignment:
| Q |
14 |
ttcttagtatgcaagttaggaaacatttcccttagaggggccgttgtttattttct-----------------cagatgccaaatagatggaggtgttct |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
10931706 |
ttcttagtatgcaagttaggaaacatttcccttagaggggccgttgtttattttctcagtattttatttttcccagatgccaaatagatggatgtgttct |
10931805 |
T |
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| Q |
97 |
ttgtaaaatctatttgccaaagaaat |
122 |
Q |
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| T |
10931806 |
ttgtaaaatctattcgccaaagaaat |
10931831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 10908534 - 10908596
Alignment:
| Q |
160 |
tacaatatttgcattataaacaaaactgccaaagaattgagaatcgcttttctctatgatatc |
222 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |
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| T |
10908534 |
tacaatatttgcattataaacaaaactgccaaaaaattgagaatcgcttttctccattatatc |
10908596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 122
Target Start/End: Complemental strand, 11030796 - 11030738
Alignment:
| Q |
64 |
ttttctcagatgccaaatagatggaggtgttctttgtaaaatctatttgccaaagaaat |
122 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11030796 |
ttttcccagatgccaaatagatggaggtgttctttgtaaaatctattcgccaaagaaat |
11030738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 11030859 - 11030805
Alignment:
| Q |
19 |
agtatgcaagttaggaaacatttccc-ttagaggggccgttgtttattttctcag |
72 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
11030859 |
agtattcaagttaggaaacatttccccttagaggggccgttgtttattttctcag |
11030805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 11006350 - 11006300
Alignment:
| Q |
16 |
cttagtatgcaagttaggaaacatttcccttagaggggccgttgtttattt |
66 |
Q |
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||||||||||||||||||||||||||||||| |||||||| || ||||||| |
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|
| T |
11006350 |
cttagtatgcaagttaggaaacatttcccttggaggggccattatttattt |
11006300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 11006209 - 11006140
Alignment:
| Q |
161 |
acaatatttgcattataaacaaaactgccaaa---gaattgagaatcgcttttctctatgatatcatgat |
227 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||| |||| || ||||||| ||||||||||||| |
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| T |
11006209 |
acaatatttgcattgtaaacaaaactgccaaaaccgaattcagaaacgtttttctccatgatatcatgat |
11006140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 10908416 - 10908466
Alignment:
| Q |
60 |
tttattttctcagatgccaaatagatggaggtgttctttgtaaaatctatt |
110 |
Q |
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|||||||| |||||||||||||||||||| ||||| |||||||||||||| |
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| T |
10908416 |
tttatttttccagatgccaaatagatggagttgttccttgtaaaatctatt |
10908466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 11043472 - 11043506
Alignment:
| Q |
70 |
cagatgccaaatagatggaggtgttctttgtaaaa |
104 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
11043472 |
cagatgccaaatagatggaggtgttctttgtaaaa |
11043506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 11043408 - 11043450
Alignment:
| Q |
20 |
gtatgcaagttaggaaacatttcccttagaggggccgttgttt |
62 |
Q |
| |
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||||| || ||||||||||||||||||||||||||| |||||| |
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| T |
11043408 |
gtatgtaaattaggaaacatttcccttagaggggccattgttt |
11043450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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