View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_2 (Length: 690)
Name: NF13900_high_2
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 280 - 672
Target Start/End: Complemental strand, 26969134 - 26968742
Alignment:
| Q |
280 |
agaaaactgcagagacagcggaagctgctaaacagaaaactgcagaaaccactgaggctgctaagcaaaagacagtagaggcaaaagacaagaccaaggt |
379 |
Q |
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| T |
26969134 |
agaaaactgcagagacagcagaagctgctaaacagaaaactgcagagacagcagaagctgctaaacaaaagacagtagaggcaaaagacaagaccaaggt |
26969035 |
T |
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| Q |
380 |
aacaaatttgaatttatggtagtatatgtttttgatgtttgagatatttattgatcagtggttgtggaattttggcatggataatgcaggaaatgttgag |
479 |
Q |
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| T |
26969034 |
aacaaatttgaatttatggtagtatatgtttttgatgtttgagatatttattgattagtggttgtggaatttttgcatggataatgcaggaaatgttgag |
26968935 |
T |
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| Q |
480 |
tgaagcagataaagaagcagggaggaaaatggaaagtggaaattatggacgtaaaggatttggagaggaaacttggaggcgtggaaatgagggggtgatc |
579 |
Q |
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| T |
26968934 |
tgaagcagataaagaagcagggaggaaaatggaaagtggaaattatggacgtaaaggatttggagaggaaacttggaggcgtggaaatgagggggtgatc |
26968835 |
T |
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| Q |
580 |
agaacggaggatactcgaacaggagcggtggcggagaggctgaaagcggcggatcagatgaccggtcagacattcaatgatgtgggacctttg |
672 |
Q |
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| T |
26968834 |
agaacggaggatactcgaacaggagcggtggcggagaggctgaaagcggcggatcagatgaccggtcagacattcaatgatgtgggacctttg |
26968742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 96 - 325
Target Start/End: Complemental strand, 26969351 - 26969122
Alignment:
| Q |
96 |
aaggcaaaggaaggaaaagatgctaccatgaataagatgggtgagtataaggattatacagctgagaaggcgaaggaagggaaggataatacagcatgga |
195 |
Q |
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| T |
26969351 |
aaggcgaaagaagggaaagatgccaccatgaataagatgggtgagtataaggattatacagctgagaaggcgaaggaagggaaggataatacagcgtgga |
26969252 |
T |
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| Q |
196 |
agattggtgagatgaaagactctgctgttgatgcggcgaaacgggctatgggttacttgggtgacaagaaagaggaagctaaggagaaaactgcagagac |
295 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26969251 |
agattggtgagatgaaggactctgctgttgatgcggcgaaacgggctatgggttacttgggtgacaagaaagaggaagctaaacagaaaactgcagagac |
26969152 |
T |
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| Q |
296 |
agcggaagctgctaaacagaaaactgcaga |
325 |
Q |
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| T |
26969151 |
agcagaagctgctaaacagaaaactgcaga |
26969122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 26969512 - 26969335
Alignment:
| Q |
1 |
cgatgcagaaaactaatgagtatgcaggatatgccggagtgaaagcaagggaagccaaggacaaagctggggagtacaaagactatgctgcggaaaaggc |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26969512 |
cgatgcagaaaactaatgagtatgcaggttatgccggagagaaagcaagggaagccaaggacaaagctggggagtacaaagactatgctgcggaaaaggc |
26969413 |
T |
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| Q |
101 |
aaaggaaggaaaagatgctaccatgaataagatgggtgagtataaggattatacagctgagaaggcgaaggaagggaa |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
26969412 |
aaaggaaggaaaagatgctaccatgaataagatgggtgagtataaggattatacggctgagaaggcgaaagaagggaa |
26969335 |
T |
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