View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_22 (Length: 297)
Name: NF13900_high_22
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 32914563 - 32914286
Alignment:
| Q |
1 |
actgtttcaagttgat----gttcaatgatgggagcaagactaaattgtatatcttgctaaccttgtagcaaatagagctaatgtgtggcttggttgtag |
96 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32914563 |
actgtttcaagttgatatatgttcaatgatgggagcaagactaaattgtatatcttgctaaccttgtagcaaatagagctaatgtgtggcttggttgtag |
32914464 |
T |
|
| Q |
97 |
aagctcgtaagagatagtttaaaatctaggttggcaggaattgatagttacaaatttatagtatccagatatacataggcatccctcaatactcagaaat |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32914463 |
aagctcgtaagagatagtttaaaatctaggttggcaggaattgatagttacaaatttatagtatccagatatacataggcatccctcaatactcagaaat |
32914364 |
T |
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| Q |
197 |
ggcatacaaagatctgttgtttatatttgtcaatggtagtatagtaaccagataggtctattagatttgattcatttc |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
32914363 |
ggcatacaaagatctgttgtttatatttgtcaatggtagtaaagtaaccaggtaggtctattagatttgattcatttc |
32914286 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 8601535 - 8601481
Alignment:
| Q |
182 |
tcaatactcagaaatggcatacaaagatctgttgtttatatttgtcaatggtagt |
236 |
Q |
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||||||||||||||||||||| |||||| |||||||| ||| ||||||| ||||| |
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| T |
8601535 |
tcaatactcagaaatggcatagaaagatgtgttgtttttatctgtcaatagtagt |
8601481 |
T |
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