View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_23 (Length: 288)
Name: NF13900_high_23
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 9384530 - 9384768
Alignment:
| Q |
30 |
aatgaccaataatataaatctaaaacatcaatggtcacaaagtattgcatcaaaggtccaataatataattctaaaacatgaagctctcattcaaacatg |
129 |
Q |
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| T |
9384530 |
aatgaccaataatataattctaaaacatcaatggtcacaaagtattgcatcaaaggtccaataatataattctaaaacatgaagctctcgttcaaacatg |
9384629 |
T |
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| Q |
130 |
gattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaacatattcaaacacaaca |
229 |
Q |
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| T |
9384630 |
gattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagttaacatattcaaacacaaca |
9384729 |
T |
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| Q |
230 |
ctctattttttaccaaacatctaaatatgcaatctaatc |
268 |
Q |
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| T |
9384730 |
ctctattttttaccaaacatctaaatatgcaatctaatc |
9384768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 114 - 269
Target Start/End: Original strand, 31947700 - 31947855
Alignment:
| Q |
114 |
ctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaac |
213 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31947700 |
ctctcattcaaacatggattgaattttactacaagatcattctctcatttacaaaaggacattaatttttactctacctatgttagcctaatgagctaac |
31947799 |
T |
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| Q |
214 |
atattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatct |
269 |
Q |
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| T |
31947800 |
atatttaaacacaacactctattttttaccaaacagctaaatatgcaatctaatct |
31947855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 31947642 - 31947683
Alignment:
| Q |
30 |
aatgaccaataatataaatctaaaacatcaatggtcacaaag |
71 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
31947642 |
aatgaccaataatataattctaagacatcaatggtcacaaag |
31947683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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