View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_24 (Length: 282)
Name: NF13900_high_24
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 31940377 - 31940158
Alignment:
| Q |
20 |
tttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttg |
119 |
Q |
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| T |
31940377 |
tttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactgtcattttatctttgttgctctatgtaaattttaattgtgcttg |
31940278 |
T |
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| Q |
120 |
cttgcccttttagggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaa |
219 |
Q |
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| T |
31940277 |
cttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaaaaaggtggaatgggacccctctgttgaaagagtgtatctaaaa |
31940178 |
T |
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| Q |
220 |
tctggaaagcctttgctact |
239 |
Q |
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||||||||||||||| |||| |
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| T |
31940177 |
tctggaaagcctttggtact |
31940158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 1338561 - 1338345
Alignment:
| Q |
20 |
tttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttg |
119 |
Q |
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| T |
1338561 |
tttgccacattccaaaggagaaggttccctatctttaattgatattatgta---ctgttattttatctttgttgctccatgtaaattctaattgtgcttg |
1338465 |
T |
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| Q |
120 |
cttgcccttttagggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaaa |
219 |
Q |
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| T |
1338464 |
cttgcctttttagggggcaaacttcagggacctcaagggtgttcttgttaaagaaaataaggtggaatgggacccgtcttttaaaagagtgtatctaaaa |
1338365 |
T |
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| Q |
220 |
tctggaaagcctttgctact |
239 |
Q |
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||||| ||||| ||| |||| |
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| T |
1338364 |
tctgggaagcccttggtact |
1338345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 9390652 - 9390510
Alignment:
| Q |
97 |
tatgtaaattttaattgtgcttgcttgcccttttagggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccct |
196 |
Q |
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| T |
9390652 |
tatgtaaattttaattgtgcttgcttgcctttttagggggcaaacttcagggacctcaagggagtgcttgttaaagaaaacaaggtggaatgggacccct |
9390553 |
T |
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| Q |
197 |
ctgttgaaagagtgcatctaaaatctggaaagcctttgctact |
239 |
Q |
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| T |
9390552 |
cagttgaaagagtgtatctaaaatctggaaagcctttggtact |
9390510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 9390710 - 9390660
Alignment:
| Q |
20 |
tttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgta |
70 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
9390710 |
tttgccacattccaaagaagaaggtatcatatcttgaattgatattatgta |
9390660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 5640448 - 5640231
Alignment:
| Q |
20 |
tttgccacattccaaagaagaaggtaccgtatcttgaattgatattatgtagtactattattttatctttgttgctctatgtaaattttaattgtgcttg |
119 |
Q |
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|||||| |||||| ||||||||||| || |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||| | |
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| T |
5640448 |
tttgcctcattccgaagaagaaggttcctgatcttgaattgatattatgtt---ctgttattttatctttgttgctccctgtaaattttaattgtgcatt |
5640352 |
T |
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| Q |
120 |
cttgccctttt-agggggcaaacttcagggacctcaagggagtgcttgttaaagnnnnnnnggtggaatgggacccctctgttgaaagagtgcatctaaa |
218 |
Q |
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| T |
5640351 |
cttgccttttttagggggcaaacttcagggacctaaagggtgtgcttgtgaaagaaaaaaaagtggagtgggacccctctgttgaaagagtgtatctgaa |
5640252 |
T |
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| Q |
219 |
atctggaaagcctttgctact |
239 |
Q |
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|||||| ||||||||| |||| |
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| T |
5640251 |
atctgggaagcctttggtact |
5640231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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