View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_high_29 (Length: 246)
Name: NF13900_high_29
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 227
Target Start/End: Original strand, 52390964 - 52391175
Alignment:
| Q |
17 |
aatattaacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacac |
116 |
Q |
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| T |
52390964 |
aatattaacggctggcatatccactattaaatgtaagaaaggcgtgtattatatagaaaagaatgttgtagcttgctgataattgacatgatagacacac |
52391063 |
T |
|
| Q |
117 |
taccaaatttannnnnnngacatgatagatggtataatgccttnnnnnnnnnggtggtatgctattgaatata--ttgttggtcattaggaatgaaaaca |
214 |
Q |
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||||||| | ||||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
52391064 |
taccaaa-aaaaaaatttgacatgatagatggtataatgccttaaaaaaaaaggtggtatgctattgaatagaatatattggtcattaggaatgaaaaca |
52391162 |
T |
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| Q |
215 |
agggaggagaata |
227 |
Q |
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| T |
52391163 |
agggaggagaata |
52391175 |
T |
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