View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13900_high_8 (Length: 552)

Name: NF13900_high_8
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13900_high_8
NF13900_high_8
[»] chr4 (17 HSPs)
chr4 (295-546)||(2570459-2570709)
chr4 (20-165)||(2569986-2570140)
chr4 (397-537)||(1012378-1012519)
chr4 (151-275)||(2570344-2570466)
chr4 (397-546)||(2266673-2266822)
chr4 (397-546)||(54995616-54995765)
chr4 (395-548)||(17612414-17612567)
chr4 (442-537)||(2708000-2708095)
chr4 (397-501)||(33036064-33036168)
chr4 (395-501)||(17513008-17513114)
chr4 (397-546)||(9743670-9743821)
chr4 (401-456)||(51959935-51959990)
chr4 (395-457)||(20097393-20097455)
chr4 (397-459)||(51204665-51204727)
chr4 (325-376)||(2704511-2704562)
chr4 (402-501)||(47236949-47237048)
chr4 (410-472)||(28293124-28293186)
[»] chr5 (21 HSPs)
chr5 (295-546)||(27579008-27579257)
chr5 (133-275)||(27578873-27579015)
chr5 (397-546)||(22616575-22616724)
chr5 (395-546)||(31878463-31878614)
chr5 (405-546)||(41417396-41417537)
chr5 (395-535)||(36055702-36055842)
chr5 (406-546)||(21320842-21320982)
chr5 (395-546)||(10237494-10237644)
chr5 (395-501)||(25653664-25653770)
chr5 (397-499)||(26411379-26411481)
chr5 (412-546)||(33163612-33163746)
chr5 (397-498)||(10053305-10053406)
chr5 (415-501)||(13380599-13380685)
chr5 (408-501)||(12081129-12081222)
chr5 (398-501)||(33752910-33753013)
chr5 (398-501)||(33848549-33848652)
chr5 (325-374)||(5112440-5112489)
chr5 (448-501)||(13887374-13887427)
chr5 (437-501)||(21266141-21266205)
chr5 (325-375)||(12910349-12910399)
chr5 (325-385)||(22616493-22616553)
[»] chr2 (18 HSPs)
chr2 (397-546)||(27138838-27138987)
chr2 (395-546)||(41643952-41644103)
chr2 (395-546)||(6177855-6178005)
chr2 (395-537)||(34441749-34441889)
chr2 (401-546)||(15650934-15651079)
chr2 (395-546)||(18059179-18059330)
chr2 (397-506)||(19073440-19073549)
chr2 (395-528)||(18779234-18779369)
chr2 (397-528)||(42005471-42005600)
chr2 (397-546)||(18947427-18947564)
chr2 (395-521)||(41713244-41713368)
chr2 (397-501)||(30844929-30845033)
chr2 (407-544)||(38249955-38250094)
chr2 (437-545)||(39788428-39788536)
chr2 (398-467)||(45414292-45414361)
chr2 (451-498)||(40913164-40913211)
chr2 (402-501)||(43446320-43446419)
chr2 (318-373)||(43446463-43446518)
[»] chr3 (18 HSPs)
chr3 (395-546)||(7568536-7568687)
chr3 (395-546)||(19606731-19606882)
chr3 (414-537)||(7758249-7758372)
chr3 (398-546)||(32180568-32180712)
chr3 (397-546)||(38392445-38392594)
chr3 (397-546)||(44880873-44881021)
chr3 (326-546)||(49359445-49359676)
chr3 (444-546)||(47930484-47930586)
chr3 (397-546)||(40640448-40640600)
chr3 (409-546)||(26000626-26000763)
chr3 (429-546)||(45879304-45879421)
chr3 (395-501)||(43485391-43485497)
chr3 (403-533)||(51878203-51878332)
chr3 (395-472)||(4556625-4556702)
chr3 (398-501)||(42204429-42204530)
chr3 (397-474)||(53811865-53811942)
chr3 (414-493)||(47870291-47870369)
chr3 (452-498)||(11018554-11018600)
[»] chr7 (13 HSPs)
chr7 (397-535)||(5781600-5781736)
chr7 (397-546)||(22955129-22955278)
chr7 (397-546)||(37854113-37854260)
chr7 (402-546)||(8133376-8133520)
chr7 (395-546)||(4618572-4618723)
chr7 (398-515)||(7743002-7743119)
chr7 (406-546)||(49002317-49002455)
chr7 (395-546)||(23402189-23402339)
chr7 (443-546)||(40382016-40382120)
chr7 (395-501)||(19786364-19786470)
chr7 (462-546)||(4902467-4902551)
chr7 (326-374)||(31520861-31520909)
chr7 (326-374)||(37346997-37347045)
[»] chr1 (12 HSPs)
chr1 (395-546)||(10758117-10758268)
chr1 (397-546)||(27118412-27118561)
chr1 (402-546)||(13876736-13876880)
chr1 (398-546)||(15964183-15964331)
chr1 (402-546)||(31804901-31805045)
chr1 (397-546)||(16127602-16127748)
chr1 (403-515)||(16132563-16132675)
chr1 (400-546)||(25943283-25943429)
chr1 (448-501)||(421526-421579)
chr1 (398-501)||(21263907-21264010)
chr1 (325-375)||(10182139-10182189)
chr1 (235-273)||(23994721-23994759)
[»] chr6 (6 HSPs)
chr6 (397-546)||(19631831-19631980)
chr6 (395-546)||(34993911-34994062)
chr6 (397-537)||(11083980-11084118)
chr6 (395-535)||(26301753-26301891)
chr6 (415-546)||(30341124-30341255)
chr6 (481-546)||(4104182-4104247)
[»] chr8 (9 HSPs)
chr8 (325-537)||(4108740-4108961)
chr8 (396-546)||(6267322-6267472)
chr8 (398-535)||(3038489-3038626)
chr8 (395-546)||(7290799-7290950)
chr8 (402-546)||(18756484-18756628)
chr8 (462-537)||(23176612-23176687)
chr8 (398-488)||(30380989-30381079)
chr8 (410-500)||(35735844-35735933)
chr8 (327-395)||(23176742-23176811)
[»] scaffold0200 (1 HSPs)
scaffold0200 (395-546)||(24635-24785)
[»] scaffold0050 (1 HSPs)
scaffold0050 (395-515)||(5670-5790)
[»] scaffold0262 (1 HSPs)
scaffold0262 (416-498)||(12031-12113)
[»] scaffold0312 (1 HSPs)
scaffold0312 (448-501)||(8993-9046)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 295 - 546
Target Start/End: Original strand, 2570459 - 2570709
Alignment:
Q  295 ttttttacatagtatactaagtaaatttttaggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatatt 394  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  2570459 ttttttacatagtat-ctaagtaaatttttaggaaaattttatggtgaaatcgtgaaaacgacttttttggtgaaattaaattgttaatcaatgaatatt 2570557  T
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2570558 ttcatgtcacgtcagattatatggtgtattgtatatttggctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 2570657  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||||||||||||||||| |||||| |||| ||| ||||||||    
T  2570658 taaacatagatttccatttgtgcactaagattgaaattcaccttaatatttt 2570709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 2569986 - 2570140
Alignment:
Q  20 atttatacgaataacccaacctgagaggttgattcaagaatgatatatatgaataggttgcatctgtctcattatttgaagaacaa---------agaga 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |           |||    
T  2569986 atttatacgaataatccaacctgagaggttgattcaagaatgatatatatgaataggttgcatctgtctcattatttgaagaatgatatatatttgaaga 2570085  T
Q  111 attctcattgattgaaggaattgttagcatatctagtttcgaaaatcaaaaccaa 165  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  2570086 attctcattgtttgaaggaattgttagcatatctagtttcgaaaatcagaaccaa 2570140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 397 - 537
Target Start/End: Original strand, 1012378 - 1012519
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaa-ttgtgtccctaattaaatcaaaagt 495  Q
    ||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |    
T  1012378 catgtcacgtcagattatatggtgtattgcacatttgcccataaggtgtgtcattatatctttacttattgcaatttgtgtccctgattaaatcaaaatt 1012477  T
Q  496 aaacatagatttccatttgtgcactatgattgagattcccct 537  Q
    ||||||||||| | ||||||||||||  ||||| ||||||||    
T  1012478 aaacatagattcctatttgtgcactaaaattgaaattcccct 1012519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 151 - 275
Target Start/End: Original strand, 2570344 - 2570466
Alignment:
Q  151 gaaaatcaaaaccaagtcccactgttataagagtttaattaatatactttatctatgcattattattttataaatgtattgaattattttgtcacgttaa 250  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||  ||    
T  2570344 gaaaatcagaaccaagtcccactattataagagtttaattaatatactttatcaatgcattattattttataaatgtattgaattgttttgtaacg--aa 2570441  T
Q  251 ttaatgaatataacaagttttttac 275  Q
    ||||| |||||||||| ||||||||    
T  2570442 ttaataaatataacaacttttttac 2570466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 2266822 - 2266673
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||| ||||| |||||| ||||||||||  | ||||| |||||| ||||||||||||||||||| ||||||||| | || |  | |||||||||||| ||    
T  2266822 catgccacgttagattacatggtgtattacacatttgtctataaggtgtgtcattatatctttacttattgcaactatgactttgattaaatcaaaatta 2266723  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||| |||||||||||||| |||||| ||| |||| ||||||||    
T  2266722 aacatagattcccatttgtgcactaagattgaaatttcccttaatatttt 2266673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 54995765 - 54995616
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||| ||||| ||||||| ||||||| | ||||| | |||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  54995765 catgtcatgtcaggttatatgatgtattgcacatttgtccataatgtgtgtctttatatctttacttattgcaattgtgtccctgattaaatcaaaatta 54995666  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    || |||||||   ||||||| |||| |||||| |||||||  ||||||||    
T  54995665 aatatagattcttatttgtgtactaagattgaaattccccctaatatttt 54995616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 395 - 548
Target Start/End: Original strand, 17612414 - 17612567
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||| ||||||| ||| ||||||  | ||||||| |||| ||||||||||  ||||||| ||||||||||| |||||   ||||||||||||     
T  17612414 ttcatgtcacgccagattaaatgatgtatttcacatttgccaataaggtgtgtcattgcatctttacttattgcaattatgtcctagattaaatcaaaat 17612513  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatattttct 548  Q
    |||||||||||| |||||||||  ||| |||||| ||||||||  |||||||||    
T  17612514 taaacatagattgccatttgtgtgctaagattgaaattcccctttatattttct 17612567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 2708000 - 2708095
Alignment:
Q  442 gtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactatgattgagattcccct 537  Q
    ||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||||||| ||||  ||||||||||||| |||||| ||||||||    
T  2708000 gtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaattaaacatggattctcatttgtgcactaagattgaaattcccct 2708095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 501
Target Start/End: Complemental strand, 33036168 - 33036064
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||| |||| ||||||||| |||||||| | |||||||||||| || |||||||||||||||| |||||||||||| ||| || |||||||||||| ||    
T  33036168 catgttacgttagattatattgtgtattgcacatttgcctataaggtttgtcattatatctttacttattgcaattgagtctctgattaaatcaaaatta 33036069  T
Q  497 aacat 501  Q
    |||||    
T  33036068 aacat 33036064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 501
Target Start/End: Complemental strand, 17513114 - 17513008
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||| ||||||||||||| |||| ||| | || ||| ||||| |||||||||||||||||||||||||| ||||| |||  ||||||||||||||     
T  17513114 ttcatgtcgcgtcagattatatagtgtgttgcacatctgcatataatgtgtgtcattatatctttatttattgtaattgagtctataattaaatcaaaat 17513015  T
Q  495 taaacat 501  Q
    |||||||    
T  17513014 taaacat 17513008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 9743670 - 9743821
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||| |||||| |||||||||||||||| | ||||  | ||||||||| |||||| ||||||| ||||||||||| ||| | | |||||||||||| ||    
T  9743670 catgtaacgtcatattatatggtgtattgcacatttttccataaagtgtttcattaaatctttacttattgcaattatgttcttgattaaatcaaaatta 9743769  T
Q  497 aacatagat-ttc-catttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||| || ||| ||||||||||||| |||| |  ||||||| ||||||||    
T  9743770 aacatatatattctcatttgtgcactaagatttatgttccccttaatatttt 9743821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 401 - 456
Target Start/End: Original strand, 51959935 - 51959990
Alignment:
Q  401 tcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatc 456  Q
    ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||    
T  51959935 tcacgtcagattatatggtgtattgcacatttgcccataaagtgtgtcattatatc 51959990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 457
Target Start/End: Complemental strand, 20097455 - 20097393
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatct 457  Q
    |||||| ||||||||||||||| |||||||| ||||||| ||||||  |||||||||||||||    
T  20097455 ttcatgccacgtcagattatatagtgtattgcatatttgtctataagatgtgtcattatatct 20097393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 459
Target Start/End: Original strand, 51204665 - 51204727
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatcttt 459  Q
    |||||||| ||||||||||||||| |||| | ||||||  |||| ||||||||||||||||||    
T  51204665 catgtcacatcagattatatggtgcattgcacatttgctaataaggtgtgtcattatatcttt 51204727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 376
Target Start/End: Original strand, 2704511 - 2704562
Alignment:
Q  325 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaat 376  Q
    ||||||||||||||||||| || |||||| |||||||  |||||||||||||    
T  2704511 aggaaaattttatggtgaagtcatgaaaatgacttttctggtgaagttaaat 2704562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 501
Target Start/End: Original strand, 47236949 - 47237048
Alignment:
Q  402 cacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||||| |||||||||||| ||| | |||| || || | ||||||||||| || |||| |||||||||||| |  ||| |||||||| ||| |||||||    
T  47236949 cacgtcaaattatatggtgttttgcagatttacccatgatgtgtgtcattagatttttacttattgcaattgcgcacctgattaaatcgaaattaaacat 47237048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 472
Target Start/End: Complemental strand, 28293186 - 28293124
Alignment:
Q  410 attatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaatt 472  Q
    |||||||| ||||||| | |||| |||||||  ||||| |||||||||||| |||||||||||    
T  28293186 attatatgatgtattgcacatttacctataagatgtgttattatatctttacttattgcaatt 28293124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 295 - 546
Target Start/End: Original strand, 27579008 - 27579257
Alignment:
Q  295 ttttttacatagtatactaagtaaatttttaggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatatt 394  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27579008 ttttttacatagtatactaagtaattttttaggaaaattttatggtgaaatcgtgaaaacgacttttttggtgaagttaaattgctaatcaatgaatatt 27579107  T
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27579108 ttcatgtcacgtcagattatatggtgtattgcatatttgcctataaagtgcgtcattatatctttatttattgcaattgtgtctctaattaaatcaaaag 27579207  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||  |||||||||||||||||| |||||| |||| ||| ||||||||    
T  27579208 taaacat--atttccatttgtgcactaagattgaaattctccttaatatttt 27579257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 133 - 275
Target Start/End: Original strand, 27578873 - 27579015
Alignment:
Q  133 gttagcatatctagtttcgaaaatcaaaaccaagtcccactgttataagagtttaattaatatactttatctatgcattattattttataaatgtattga 232  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  27578873 gttagcatatctagtttcgaaaatcagaaccaagtcccactattataagagtttaattaatatattttatcaatgcattattattttataaatgtattga 27578972  T
Q  233 attattttgtcacgttaattaatgaatataacaagttttttac 275  Q
    ||| |||||||||||||||||||||||||||||| ||||||||    
T  27578973 attgttttgtcacgttaattaatgaatataacaacttttttac 27579015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 22616575 - 22616724
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||||||||||| |||||||||||||||| | ||||||| |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  22616575 catgtcacgtcatattatatggtgtattggacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaatta 22616674  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||  |||||||||||||  ||||| |||||||| ||||||||    
T  22616675 aacatagattctcatttgtgcactaaaattgaaattccccttaatatttt 22616724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 31878463 - 31878614
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||| ||||  ||||||||||||| ||||||||||||     
T  31878463 ttcatgtcacgtcagattatatggtgtattgcacatttgtctataaggtgtgtcattatatctttacttatgacaattgtgtccctgattaaatcaaaat 31878562  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||||| | |||||||||||| |||||| ||||  || ||||||||    
T  31878563 taaacatagattcctatttgtgcactaagattgaaattcttcttaatatttt 31878614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 405 - 546
Target Start/End: Complemental strand, 41417537 - 41417396
Alignment:
Q  405 gtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacataga 504  Q
    ||||||||||||||||||||| | ||||||  |||| |||||||||| |||||||| ||||||||||||||||||  |||||||||||| ||||||||||    
T  41417537 gtcagattatatggtgtattgcaaatttgctcataaggtgtgtcattttatctttacttattgcaattgtgtcccagattaaatcaaaattaaacataga 41417438  T
Q  505 tttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||  ||||||||||||| |||||| |||||||| | ||||||    
T  41417437 ttctcatttgtgcactaagattgaaattccccttattatttt 41417396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 395 - 535
Target Start/End: Complemental strand, 36055842 - 36055702
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||| | |||||||| ||||||||||| | ||||||  |||| ||||||||||||||||||| ||||| ||||||||||||  ||||||||||||     
T  36055842 ttcatgtcgcatcagattacatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattacaattgtgtccccgattaaatcaaaat 36055743  T
Q  495 taaacatagatttccatttgtgcactatgattgagattccc 535  Q
    ||||||||||||  ||||||||||||| |||||| ||||||    
T  36055742 taaacatagattctcatttgtgcactaagattgaaattccc 36055702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 406 - 546
Target Start/End: Original strand, 21320842 - 21320982
Alignment:
Q  406 tcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagat 505  Q
    |||||||||||||||||||| |||||||| |||||  ||| |||||||||||||| ||||| |||||||||| || |||||||||||| |||||||||||    
T  21320842 tcagattatatggtgtattgcatatttgcatataagatgtatcattatatctttacttattacaattgtgtctctgattaaatcaaaattaaacatagat 21320941  T
Q  506 ttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |  |||||| ||||||  ||||| ||| | || ||||||||    
T  21320942 tctcatttgagcactaaaattgaaatttcgcttaatatttt 21320982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 10237494 - 10237644
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||| |||||||||||||||||||||||||   ||||| | |||| || | ||||||||| |||| ||||| ||||||||||||  ||||||||||||     
T  10237494 ttcatttcacgtcagattatatggtgtattgcgcatttgtccataaggtatttcattatatatttacttattccaattgtgtcccagattaaatcaaaa- 10237592  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||  ||||||| ||||| |||||| ||| |||| ||||||||    
T  10237593 taaacatagattctcatttgtacactaagattgaaatttcccttaatatttt 10237644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 395 - 501
Target Start/End: Original strand, 25653664 - 25653770
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||| |||||||||||| |||||||||||| | ||||||  |||| ||||||||||||||||||| ||||||||| | | ||||| ||||||||||||     
T  25653664 ttcatatcacgtcagattgtatggtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaactatttccctgattaaatcaaaat 25653763  T
Q  495 taaacat 501  Q
    |||||||    
T  25653764 taaacat 25653770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 397 - 499
Target Start/End: Original strand, 26411379 - 26411481
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||||||||||| |||||||||||||||||| ||||||  ||| ||| || || ||||| |||| ||||||||||||| |||||||||||||||||| ||    
T  26411379 catgtcacgtcaaattatatggtgtattgtacatttgctcatacagtatgccactatatatttacttattgcaattgtatccctaattaaatcaaaatta 26411478  T
Q  497 aac 499  Q
    |||    
T  26411479 aac 26411481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 546
Target Start/End: Original strand, 33163612 - 33163746
Alignment:
Q  412 tatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccat 511  Q
    |||||||||||||| | ||||  | |||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| |||  |||    
T  33163612 tatatggtgtattgcacatttatccataaggtgtgccattatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacataaattctcat 33163711  T
Q  512 ttgtgcactatgattgagattcccctgaatatttt 546  Q
     |||||| || |||||| |||  ||| ||||||||    
T  33163712 gtgtgcattaagattgaaattttccttaatatttt 33163746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 397 - 498
Target Start/End: Original strand, 10053305 - 10053406
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||| ||||| |||||||| |||||||| | ||||||  |||| ||||||||||||||||||| |||||||||||| |||||| |||||||||||| ||    
T  10053305 catgttacgtcggattatatcgtgtattgcacatttgctcataaggtgtgtcattatatctttacttattgcaattgagtccctgattaaatcaaaatta 10053404  T
Q  497 aa 498  Q
    ||    
T  10053405 aa 10053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 13380599 - 13380685
Alignment:
Q  415 atggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||||||||| | |||| || ||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||    
T  13380599 atggtgtattgcacatttacccataaaatatgtcattatatctttatttattgcaattgtatccctgattaaatcaaaattaaacat 13380685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 12081222 - 12081129
Alignment:
Q  408 agattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    |||||||||||||||||  | |||||| ||||| ||||||| ||||||||||| |||||||||||  |||||| |||||||||||| |||||||    
T  12081222 agattatatggtgtattacacatttgcttataaggtgtgtccttatatctttacttattgcaattaagtccctgattaaatcaaaattaaacat 12081129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 501
Target Start/End: Complemental strand, 33753013 - 33752910
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    ||||||| |||||||||| ||| ||||| | ||||| | | || |||||| ||| |||||||| ||||||| ||||||||||| ||||||| |||  |||    
T  33753013 atgtcacttcagattatagggtttattgcacatttgtccacaaggtgtgttattgtatctttacttattgccattgtgtccctgattaaataaaatttaa 33752914  T
Q  498 acat 501  Q
    ||||    
T  33752913 acat 33752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 501
Target Start/End: Complemental strand, 33848652 - 33848549
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    ||||||| |||||||||| | | ||||| | ||||| | | || |||||| ||| |||||||||||||||  |||||||| || |||||||||||| |||    
T  33848652 atgtcacttcagattataggatttattgcacatttgtccacaatgtgtgttattgtatctttatttattgtcattgtgtctctgattaaatcaaaattaa 33848553  T
Q  498 acat 501  Q
    ||||    
T  33848552 acat 33848549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 325 - 374
Target Start/End: Complemental strand, 5112489 - 5112440
Alignment:
Q  325 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaa 374  Q
    ||||||||||||||||||| || |||||| |||||||| |||||||||||    
T  5112489 aggaaaattttatggtgaagtcatgaaaatgacttttttggtgaagttaa 5112440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 501
Target Start/End: Original strand, 13887374 - 13887427
Alignment:
Q  448 cattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    |||||||| |||| ||||||||||||||||| | |||||||||||| |||||||    
T  13887374 cattatatttttacttattgcaattgtgtccttgattaaatcaaaattaaacat 13887427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 501
Target Start/End: Original strand, 21266141 - 21266205
Alignment:
Q  437 ataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    |||| |||| |||||||||||||| |||||||||||| ||| || |||||||||||  |||||||    
T  21266141 ataaggtgtatcattatatctttacttattgcaattgagtctctgattaaatcaaatttaaacat 21266205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 375
Target Start/End: Original strand, 12910349 - 12910399
Alignment:
Q  325 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaa 375  Q
    ||||||||| ||||||||| || |||||| |||||||| ||||||||||||    
T  12910349 aggaaaattctatggtgaagtcatgaaaatgacttttttggtgaagttaaa 12910399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 22616493 - 22616553
Alignment:
Q  325 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatca 385  Q
    ||||||||| ||||||||| || |||||| |||||||  ||||||||||||| || |||||    
T  22616493 aggaaaattctatggtgaagtcatgaaaatgacttttctggtgaagttaaatggccaatca 22616553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 27138987 - 27138838
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||    |||||||||||||||| |||||||||||| ||    
T  27138987 catgtcacgtcagattatacggtgtattgcatatttgcccataaagtgtgtcattatatctttacgggttgcaattgtgtccctgattaaatcaaaatta 27138888  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||| |||||||||||||| |||||| |||| ||| ||||||||    
T  27138887 aacatagattcccatttgtgcactaagattgaaattcaccttaatatttt 27138838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 41643952 - 41644103
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||||||||||||||||||||||| | |||||   |||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||     
T  41643952 ttcatgtcacgtcagattatatggtgtattgcacatttgatcataaggtgtgtcattatatctttacttattgcaattgtatccctgattaaatcaaaat 41644051  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||| ||  ||||||||||||| |||||| |||||||| ||||||||    
T  41644052 taaacatagtttctcatttgtgcactaagattgaaattccccttaatatttt 41644103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 6177855 - 6178005
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||||||||||||||||||||||||||   ||||||| |||| || ||||||||||| |||| ||||| ||||||||||||| ||||||||||||     
T  6177855 ttcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgtcattatatatttacttattccaattgtgtccctgattaaatcaaaa- 6177953  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||  ||||||||||||| |||||| ||| |||| ||||||||    
T  6177954 taaacatagattctcatttgtgcactaagattgaaatttcccttaatatttt 6178005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 395 - 537
Target Start/End: Complemental strand, 34441889 - 34441749
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||||||  ||||||||||||||| | ||||||| ||||  |||||| ||||||||||| ||||||||||||||||||| ||||||||||||     
T  34441889 ttcatgtcacgtca--ttatatggtgtattgcacatttgcccataagatgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaat 34441792  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccct 537  Q
    ||||||||||||  |||||||||||||  ||||| ||||||||    
T  34441791 taaacatagattctcatttgtgcactaaaattgaaattcccct 34441749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 401 - 546
Target Start/End: Original strand, 15650934 - 15651079
Alignment:
Q  401 tcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaaca 500  Q
    |||||| |||||||||||||||||  | ||||||| |||| ||||||||||||||||||| ||||||||||||||| ||| |||||||||||| ||||||    
T  15650934 tcacgtaagattatatggtgtatttcacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgttcctgattaaatcaaaattaaaca 15651033  T
Q  501 tagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||| |  |||||||||||||  ||||| |||| ||| ||||||||    
T  15651034 tagaatctcatttgtgcactaaaattgaaattctcctaaatatttt 15651079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 18059330 - 18059179
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||| ||||||||||||||||||||| ||||||  | |||| |||||| |||||||||||| ||||||||||||||||| | |||| || ||||     
T  18059330 ttcatgtcatgtcagattatatggtgtattgcatatttatccataatgtgtgttattatatctttacttattgcaattgtgtccttgattagattaaaat 18059231  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||| |||||||  | ||||||||||| |||||| |||||||| ||||||||    
T  18059230 taaatatagattctcgtttgtgcactaagattgaaattccccttaatatttt 18059179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 397 - 506
Target Start/End: Original strand, 19073440 - 19073549
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||||||||||||||||||||||||  | ||||| |||||| |||||||||||||| |||| |||||| |||||||||||| |||||||||||  ||    
T  19073440 catgtcacgtcagattatatggtgtattccacatttgtctataaggtgtgtcattatatatttacttattgaaattgtgtccctgattaaatcaaagtta 19073539  T
Q  497 aacatagatt 506  Q
    ||||||||||    
T  19073540 aacatagatt 19073549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 395 - 528
Target Start/End: Complemental strand, 18779369 - 18779234
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcct--ataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaa 492  Q
    |||||||||| |||||||||||||| ||||| | |||||||   ||||||||||| ||| |||||||| ||||||||||||||| ||| |||||||||||    
T  18779369 ttcatgtcacatcagattatatggtttattgcacatttgccataataaagtgtgttattttatctttacttattgcaattgtgttcctgattaaatcaaa 18779270  T
Q  493 agtaaacatagatttccatttgtgcactatgattga 528  Q
      ||||||||||||  ||||||||||||| ||||||    
T  18779269 gttaaacatagattctcatttgtgcactaagattga 18779234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 397 - 528
Target Start/End: Original strand, 42005471 - 42005600
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccc-taattaaatcaaaagt 495  Q
    ||||||||||||  ||||||||||||||| | ||| ||| |||| ||||||||||| ||||||| |||||| ||||||||||| | |||||||||||| |    
T  42005471 catgtcacgtca--ttatatggtgtattgcacatt-gcccataaggtgtgtcattacatctttacttattgtaattgtgtcccctgattaaatcaaaatt 42005567  T
Q  496 aaacatagatttccatttgtgcactatgattga 528  Q
    |||||||||||  ||||||||||||| ||||||    
T  42005568 aaacatagattctcatttgtgcactaagattga 42005600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 18947564 - 18947427
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||||||||||||||||||||||||||| |||   | ||||  ||||||||||||            |||||||||||||| |||||||||||||||    
T  18947564 catgtcacgtcagattatatggtgtattgtacattcatccataagatgtgtcattata------------gcaattgtgtccctgattaaatcaaaagta 18947477  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||  |||||||||| || |||||| |||||||| ||||||||    
T  18947476 aacatagattctcatttgtgcattaagattgaaattccccttaatatttt 18947427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 395 - 521
Target Start/End: Original strand, 41713244 - 41713368
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||||||  ||||||||||| ||  | ||||||| ||||  ||||||||||||| | || ||||| ||||||| ||||||||||||||||||     
T  41713244 ttcatgtcacgtca--ttatatggtgtgttacacatttgcccataagatgtgtcattatatgtatacttattacaattgtttccctaattaaatcaaaat 41713341  T
Q  495 taaacatagatttccatttgtgcacta 521  Q
    ||||||||||||  || ||||||||||    
T  41713342 taaacatagattctcacttgtgcacta 41713368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 397 - 501
Target Start/End: Original strand, 30844929 - 30845033
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||||||||||||||||| | ||||| | ||||| | ||||  |||||||||| ||||||| |||||||| ||| ||| ||||||||||||||| ||    
T  30844929 catgtcacgtcagattatatgatatattgcacatttgtccataagatgtgtcattaaatctttacttattgcatttgagtctctaattaaatcaaaatta 30845028  T
Q  497 aacat 501  Q
    |||||    
T  30845029 aacat 30845033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 407 - 544
Target Start/End: Complemental strand, 38250094 - 38249955
Alignment:
Q  407 cagattatatggtgtattgtatatttgcctataaagtgt----gtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacata 502  Q
    ||||||||||| ||||||| | ||||||| |||| || |    ||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |  |    
T  38250094 cagattatatgatgtattgcacatttgccaataaggtatatatgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaatc--a 38249997  T
Q  503 gatttccatttgtgcactatgattgagattcccctgaatatt 544  Q
    |||| | ||||| || ||| |||||| |||||||| ||||||    
T  38249996 gattccaatttgcgctctaagattgaaattccccttaatatt 38249955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 545
Target Start/End: Complemental strand, 39788536 - 39788428
Alignment:
Q  437 ataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactatgattgagattcccc 536  Q
    ||||| |||||||||||||  ||| ||| ||||||| |||| ||  ||||||||||| ||||||||||||   ||||||||||||  ||||| |||||||    
T  39788536 ataaaatgtgtcattatattgttacttactgcaattatgtctctggttaaatcaaaattaaacatagattctgatttgtgcactaaaattgaaattcccc 39788437  T
Q  537 tgaatattt 545  Q
    | |||||||    
T  39788436 ttaatattt 39788428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 45414361 - 45414292
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattg 467  Q
    ||||||||||||| ||||||||| |||| ||||||||  ||||| | ||||||||| |||||||||||||    
T  45414361 atgtcacgtcagaatatatggtgcattgcatatttgcacataaaatatgtcattatttctttatttattg 45414292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 498
Target Start/End: Complemental strand, 40913211 - 40913164
Alignment:
Q  451 tatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaa 498  Q
    ||||| |||||||||||||||||||||| | |||||||||||| ||||    
T  40913211 tatatttttatttattgcaattgtgtccttgattaaatcaaaattaaa 40913164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 501
Target Start/End: Complemental strand, 43446419 - 43446320
Alignment:
Q  402 cacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||||| |||||||||||| ||| |  |||||  |||  || ||||| |||||||||| ||||| ||||||||||| |||| |||| |||| |||||||    
T  43446419 cacgtcaaattatatggtgtgttgcacgtttgctcatagggtatgtcactatatctttacttattacaattgtgtccttaataaaattaaaattaaacat 43446320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 43446518 - 43446463
Alignment:
Q  318 aatttttaggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagtta 373  Q
    |||||||||||||||| ||||||||| || ||| || |||||||| ||||||||||    
T  43446518 aatttttaggaaaattctatggtgaagtcatgagaatgactttttcggtgaagtta 43446463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 7568687 - 7568536
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||||||||||||||||||  |||||| | ||||||  |||||||||||||||||||||||| ||||| |||||||||| || ||||||||||||     
T  7568687 ttcatgtcacgtcagattatatgcagtattgcacatttgcacataaagtgtgtcattatatctttacttattacaattgtgtctctgattaaatcaaaat 7568588  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||  ||||||||||||| |||||| |||||||| ||||||||    
T  7568587 taaacatagattctcatttgtgcactaagattgaaattccccttaatatttt 7568536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 19606882 - 19606731
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||| |||||||||||||||||||||||||| | ||||  | |||| ||||||||||||||||||| || ||||||| |||||||| ||||||||||||     
T  19606882 ttcaggtcacgtcagattatatggtgtattgaacatttttccataaggtgtgtcattatatctttacttgttgcaatcgtgtcccttattaaatcaaaat 19606783  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||||||||||||||| | |||||| |||||||| ||||||||    
T  19606782 taaacatagatttccatttgtgcaccaagattgaaattccccttaatatttt 19606731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 414 - 537
Target Start/End: Complemental strand, 7758372 - 7758249
Alignment:
Q  414 tatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccattt 513  Q
    |||||||||||||| ||||||| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||  |||||    
T  7758372 tatggtgtattgtacatttgcccataaggtgcgtcattatatctttacttattgcaattgtgtccctaattaaatcaaaattaaacatagattctcattt 7758273  T
Q  514 gtgcactatgattgagattcccct 537  Q
    |||||||| |||||| ||||||||    
T  7758272 gtgcactaagattgaaattcccct 7758249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 398 - 546
Target Start/End: Complemental strand, 32180712 - 32180568
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    |||||||||||||||||| |||  |||| | ||||| |||  | ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||    
T  32180712 atgtcacgtcagattatacggt--attgcacatttgtcta--aggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaa 32180617  T
Q  498 acatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||    
T  32180616 acatagatttccatttgtgcactaagattgaaattccccttaatatttt 32180568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 38392594 - 38392445
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||| | ||||||||||| ||||||| | ||||||| |||| |||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||    
T  38392594 catgtcatgacagattatatgatgtattgcacatttgcccataatgtgtgtcattatatatttacttattgcaattgtgtccctgattaaatcaaaatta 38392495  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||| ||||| ||||||| |||||| ||| |||| ||||||||    
T  38392494 aacatagattttcatttatgcactaagattgaaatttcccttaatatttt 38392445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 44880873 - 44881021
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||||||||||| ||||||||||||| | ||||||  |||| | ||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||    
T  44880873 catgtcacgtcagataatatggtgtattgcacatttgctcataagg-gtgtcattatatctttacttattacaattgtgtccctgattaaatcaaaatta 44880971  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||  ||||||||||||| |||||| |||||||| ||||||||    
T  44880972 aacatagattcacatttgtgcactaggattgaaattccccttaatatttt 44881021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 546
Target Start/End: Complemental strand, 49359676 - 49359445
Alignment:
Q  326 ggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatatt-----------ttcatgtcacgtcagattat 414  Q
    |||||||| ||||||||| || |||||| ||||||||  |||||||||||| || ||||| |||| |||           | |||| ||||||| |||||    
T  49359676 ggaaaattctatggtgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaatccatgacacgtcatattat 49359577  T
Q  415 atggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttg 514  Q
    ||| ||||||| | ||||||  |||| ||||||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  49359576 atgatgtattgcacatttgctcataaggtgtgtcattatatctttacttaatgcaattgtgtccctgattaaatcaaaattaaacatagatttctatttg 49359477  T
Q  515 tgcactatgattgagattcccctgaatatttt 546  Q
    ||||||| |||||| |||||| | ||||||||    
T  49359476 tgcactaagattgaaattccctttaatatttt 49359445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 444 - 546
Target Start/End: Complemental strand, 47930586 - 47930484
Alignment:
Q  444 gtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactatgattgagattcccctgaatat 543  Q
    ||||||||||  ||||| ||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||| |||||| |||||||| |||||    
T  47930586 gtgtcattattcctttacttattgcaattgtgtccctcattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattccccttaatat 47930487  T
Q  544 ttt 546  Q
    |||    
T  47930486 ttt 47930484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 40640600 - 40640448
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttat---tgcaattgtgtccctaattaaatcaaaa 493  Q
    |||||||||||| |||||||||||||||| | ||||||| ||||  ||||||||||||| |||| ||||   ||||||||||||| | ||||||||||||    
T  40640600 catgtcacgtcatattatatggtgtattgcacatttgcccataagatgtgtcattatatttttacttattgctgcaattgtgtccttgattaaatcaaaa 40640501  T
Q  494 gtaaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
     |||| ||| |||  |||||||||||||  ||||| |||| ||| ||||||||    
T  40640500 ttaaagatatattctcatttgtgcactaaaattgaaattctccttaatatttt 40640448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 409 - 546
Target Start/End: Original strand, 26000626 - 26000763
Alignment:
Q  409 gattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttc 508  Q
    ||||||| ||||||||| |||||| |   ||||||||||||||||  ||||| ||||||||||||||||  | |||||||||||| ||||||||||||      
T  26000626 gattatacggtgtattgcatattttctcgtaaagtgtgtcattatcgctttacttattgcaattgtgtcattgattaaatcaaaattaaacatagattct 26000725  T
Q  509 catttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||||||  ||||| ||| |||| ||||||||    
T  26000726 catttgtgcactaaaattgaaatttcccttaatatttt 26000763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 429 - 546
Target Start/End: Complemental strand, 45879421 - 45879304
Alignment:
Q  429 atttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactatgattga 528  Q
    ||||||| |||| ||||||| ||||||||||| |||||| |||||| | ||| |||||||||||| ||||||||||||  |||||||||||||  |||||    
T  45879421 atttgcccataaggtgtgtcgttatatctttacttattgaaattgttttcctgattaaatcaaaattaaacatagattctcatttgtgcactaacattga 45879322  T
Q  529 gattcccctgaatatttt 546  Q
     ||||||||  |||||||    
T  45879321 aattcccctttatatttt 45879304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 501
Target Start/End: Original strand, 43485391 - 43485497
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||| ||| ||||||||||||||| |||| |||||||||  |||  ||||||||||||| |||| |||||| ||||| |||||| ||||||| ||||     
T  43485391 ttcatgccacttcagattatatggtgcattgcatatttgcccctaagatgtgtcattatatttttacttattgtaattgagtccctgattaaattaaaat 43485490  T
Q  495 taaacat 501  Q
    |||||||    
T  43485491 taaacat 43485497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 403 - 533
Target Start/End: Original strand, 51878203 - 51878332
Alignment:
Q  403 acgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacata 502  Q
    |||||| |||||||||| ||||| ||||||| | |||| |||||| |||||||  ||| |||||||||||||||| |  ||||||| |||| ||||||||    
T  51878203 acgtcaaattatatggt-tattgcatatttgtccataatgtgtgttattatattgttacttattgcaattgtgtctccgattaaataaaaattaaacata 51878301  T
Q  503 gatttccatttgtgcactatgattgagattc 533  Q
    ||||  ||||| ||||||| |||||| ||||    
T  51878302 gattctcatttatgcactaagattgaaattc 51878332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 395 - 472
Target Start/End: Original strand, 4556625 - 4556702
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaatt 472  Q
    |||||||||||||||||||||||| |||||| | ||||||  |||| ||||||||||||||||||| ||||| |||||    
T  4556625 ttcatgtcacgtcagattatatggcgtattgcacatttgctcataatgtgtgtcattatatctttacttattacaatt 4556702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 398 - 501
Target Start/End: Original strand, 42204429 - 42204530
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    ||||||| || ||||||||||||||||| |||||| |  |||| |||||||| |||||||||| |||||||||||| || ||| |||||||||||| |||    
T  42204429 atgtcacatcggattatatggtgtattgcatatttactcataaggtgtgtca-tatatctttacttattgcaattgagt-cctgattaaatcaaaattaa 42204526  T
Q  498 acat 501  Q
    ||||    
T  42204527 acat 42204530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 397 - 474
Target Start/End: Complemental strand, 53811942 - 53811865
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgt 474  Q
    ||||||||||||||||||||||||||||  | |||||   |||| ||||||||||||||||||| ||| |||||||||    
T  53811942 catgtcacgtcagattatatggtgtattccacatttgtacataaggtgtgtcattatatctttacttaatgcaattgt 53811865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 493
Target Start/End: Original strand, 47870291 - 47870369
Alignment:
Q  414 tatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaa 493  Q
    ||||||| |||| | ||||||| |||| |||||||||||||||||||  ||||||||||| |||| | ||||||||||||    
T  47870291 tatggtgcattgcacatttgcc-ataaggtgtgtcattatatctttacgtattgcaattgagtccttgattaaatcaaaa 47870369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 11018554 - 11018600
Alignment:
Q  452 atatctttatttattgcaattgtgtccctaattaaatcaaaagtaaa 498  Q
    |||| |||| ||||||||||||| |||||||||||||||||| ||||    
T  11018554 atatttttacttattgcaattgtatccctaattaaatcaaaattaaa 11018600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 397 - 535
Target Start/End: Original strand, 5781600 - 5781736
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||||||||  ||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||| ||    
T  5781600 catgtcacgtca--ttatatggtgtattgcatatttgaccataaaatgtgtcattatatctttatttattgcaattgtgtccttgattaaatcaaaatta 5781697  T
Q  497 aacatagatttccatttgtgcactatgattgagattccc 535  Q
    ||||||||||  ||||||||||||| |||||| ||||||    
T  5781698 aacatagattctcatttgtgcactaagattgaaattccc 5781736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 22955278 - 22955129
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||||||||||| |||||||||||||||| | ||||||  |||| || ||||||| |||||||| ||||||||||||||||||| |||||||||| | ||    
T  22955278 catgtcacgtcaaattatatggtgtattgcacatttgctcataaggtatgtcattgtatctttacttattgcaattgtgtcccttattaaatcaacatta 22955179  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||  ||||||||||||| |||||| ||| |||| ||||||||    
T  22955178 aacatagattctcatttgtgcactaagattgaaatttcccttaatatttt 22955129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 397 - 546
Target Start/End: Complemental strand, 37854260 - 37854113
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||||||||||| |||||||||||||||| | ||||||  |||| || |||  ||||||||||| | ||||||||||||||||| |||||||||||| ||    
T  37854260 catgtcacgtcacattatatggtgtattgcacatttgctcataaggtatgt--ttatatctttactgattgcaattgtgtccctgattaaatcaaaatta 37854163  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||| ||||||| ||||| |||||| |||||||| ||||||||    
T  37854162 aacatagattttcatttgtacactaagattgaaattccccttaatatttt 37854113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 402 - 546
Target Start/End: Complemental strand, 8133520 - 8133376
Alignment:
Q  402 cacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    |||||||||||||||||||||||| |  ||||| ||||| || |||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||| |    
T  8133520 cacgtcagattatatggtgtattgcacgtttgcttataaggtctgtcattatatcattacttattgcaattgcgtccctaattaaatcaaaattaaacgt 8133421  T
Q  502 agatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||   ||||||||| || |||||| |||||||| ||||||||    
T  8133420 agattcttatttgtgcagtaagattgaaattccccttaatatttt 8133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 4618723 - 4618572
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||| | ||| |||||||||||||||| | |||||   ||||| ||||||||||||| |||||||||||||||||| | ||| ||||||||||||     
T  4618723 ttcatgtcgcttcaaattatatggtgtattgcacatttgttcataaaatgtgtcattatatatttatttattgcaattgtatacctcattaaatcaaaat 4618624  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||  ||||||||||| | |||||| |||||||| ||||||||    
T  4618623 taaacatagattctcatttgtgcaccaagattgaaattccccttaatatttt 4618572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 398 - 515
Target Start/End: Original strand, 7743002 - 7743119
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    ||||||||| |||||||||||||||||||| ||||| | |||| | ||||||||||||||||| |||||||||||||| |||| ||||||| |||| |||    
T  7743002 atgtcacgttagattatatggtgtattgtacatttgtccataaggcgtgtcattatatctttacttattgcaattgtgcccctgattaaattaaaattaa 7743101  T
Q  498 acatagatttccatttgt 515  Q
    |||||||||  |||||||    
T  7743102 acatagattctcatttgt 7743119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 406 - 546
Target Start/End: Original strand, 49002317 - 49002455
Alignment:
Q  406 tcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagat 505  Q
    |||||||||||||||||||| | |||| ||  |||   ||||||||||||||||| |||||||||||||||  || |||||||||||| |||||||||||    
T  49002317 tcagattatatggtgtattgcacattttcccttaa--ggtgtcattatatctttacttattgcaattgtgtgtctgattaaatcaaaattaaacatagat 49002414  T
Q  506 ttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    | |||||||||||||| |||| | |||||||| ||||||||    
T  49002415 tcccatttgtgcactaagattaaaattccccttaatatttt 49002455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 23402339 - 23402189
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||||||||| ||||||||||||||||   ||||| | ||||  | ||||||||||| |||| ||||| ||||||||||||| ||||||||||||     
T  23402339 ttcatgtcacgtcatattatatggtgtattgcgcatttgtccataagatatgtcattatatatttacttatttcaattgtgtccctgattaaatcaaaa- 23402241  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||| ||||  ||||||||||||| || ||| ||| |||| ||||||||    
T  23402240 taaacattgattctcatttgtgcactaagactgaaatttcccttaatatttt 23402189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 443 - 546
Target Start/End: Original strand, 40382016 - 40382120
Alignment:
Q  443 tgtgtcattatatctttatttattgcaatt-gtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactatgattgagattcccctgaat 541  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||| |||| ||||||||||||  ||||||||||||| |||||| ||| |||| |||    
T  40382016 tgtgtcattatatctttacttattacaatttgtgtccctaattaaataaaaattaaacatagattatcatttgtgcactaagattgaaatttcccttaat 40382115  T
Q  542 atttt 546  Q
    |||||    
T  40382116 atttt 40382120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 395 - 501
Target Start/End: Original strand, 19786364 - 19786470
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||| ||||||| |||||||| || |||| | ||||| || ||| ||||||||||||||||||| |||||||||||| |||| | ||||||||||||     
T  19786364 ttcatgccacgtcatattatatgatgcattgcacatttgtctgtaaggtgtgtcattatatctttacttattgcaattgagtccttgattaaatcaaaat 19786463  T
Q  495 taaacat 501  Q
    |||||||    
T  19786464 taaacat 19786470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 462 - 546
Target Start/End: Original strand, 4902467 - 4902551
Alignment:
Q  462 ttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||| |||||||| |||||||||||| |||||||||||| | | || ||||||| ||| || |||||||| ||||||||    
T  4902467 ttattgcaatagtgtccctgattaaatcaaaattaaacatagattccaaattatgcactaagatagaaattccccttaatatttt 4902551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 374
Target Start/End: Complemental strand, 31520909 - 31520861
Alignment:
Q  326 ggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaa 374  Q
    ||||||||||||| |||| || |||||| |||||||| |||||||||||    
T  31520909 ggaaaattttatgatgaagtcatgaaaatgacttttttggtgaagttaa 31520861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 326 - 374
Target Start/End: Original strand, 37346997 - 37347045
Alignment:
Q  326 ggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaa 374  Q
    |||||||||||||||||| || |||||| || ||||| |||||||||||    
T  37346997 ggaaaattttatggtgaagtcatgaaaatgatttttttggtgaagttaa 37347045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 10758268 - 10758117
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||| ||| |||||||||||||||||||| | |||||||||||  |||||||||||||| |||| ||||||||||||||||||||||||||||||||     
T  10758268 ttcatgccacatcagattatatggtgtattgaacatttgcctatagtgtgtgtcattatatttttacttattgcaattgtgtccctaattaaatcaaaat 10758169  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||| |||  ||||||||||||| |||||| ||| | || ||||||||    
T  10758168 taaacatatattctcatttgtgcactaagattgaaatttctcttaatatttt 10758117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 27118412 - 27118561
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||| ||||||| |||||||| ||||||| | |||||   |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||    
T  27118412 catgccacgtcatattatatgatgtattgcacatttgttcataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaatta 27118511  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||  |||| |||||||| |||||| |||||||| ||||||||    
T  27118512 aacatagattctcattcgtgcactaagattgaaattccccttaatatttt 27118561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 402 - 546
Target Start/End: Complemental strand, 13876880 - 13876736
Alignment:
Q  402 cacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||||| || ||||||||||||  | ||||||| ||||||||||||||||||| |||| ||||||||||||| ||| | |||||||||||| |||||||    
T  13876880 cacgtcatatcatatggtgtattacacatttgcccataaagtgtgtcattatatttttagttattgcaattgtatccttgattaaatcaaaattaaacat 13876781  T
Q  502 agatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||| ||||||||||||||  ||||| |||||||| ||||||||    
T  13876780 agattcccatttgtgcactaatattgaaattccccttaatatttt 13876736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 398 - 546
Target Start/End: Original strand, 15964183 - 15964331
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    ||||||||||| ||||||| |||||||| | ||||| | ||||  |||||||||||||  ||| | ||  ||||||||||||| |||||||||||| |||    
T  15964183 atgtcacgtcaaattatatagtgtattgcacatttgtccataagatgtgtcattatatacttactgatatcaattgtgtccctgattaaatcaaaattaa 15964282  T
Q  498 acatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||  ||||||||||||| |||||| |||||||| ||||||||    
T  15964283 acatagattcacatttgtgcactaagattgaaattccccttaatatttt 15964331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 402 - 546
Target Start/End: Complemental strand, 31805045 - 31804901
Alignment:
Q  402 cacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||| |||||||||||||||||| | ||||||| ||||  | |||||||||||||||| || ||| ||||||||| || |||||||||||| |||||||    
T  31805045 cacgttagattatatggtgtattgcacatttgccgataacatatgtcattatatctttacttcttgaaattgtgtcactgattaaatcaaaattaaacat 31804946  T
Q  502 agatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||  ||||| ||||||| |||||| ||| |||| ||||||||    
T  31804945 agattctcatttatgcactaagattgaaatttcccttaatatttt 31804901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 16127602 - 16127748
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||| |||||||||||||||| ||||||| | |||| |  |||| |||||||||||||| |||| ||||||||||  ||||||| | |||||| ||| ||    
T  16127602 catgacacgtcagattatatgatgtattgcacatttactcataaggtgtgtcattatatgtttacttattgcaat--tgtccctgaataaatc-aaatta 16127698  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||  ||||||||||||| ||||||||||||||| ||||||||    
T  16127699 aacatagattctcatttgtgcactaagattgagattccccttaatatttt 16127748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 403 - 515
Target Start/End: Original strand, 16132563 - 16132675
Alignment:
Q  403 acgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacata 502  Q
    |||| |||||||| ||||||||| | ||||||  |||| ||||||||||||||||||| |||||||||||||||| || |||||||||||| ||||||||    
T  16132563 acgtgagattatacggtgtattgcacatttgcacataatgtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaattaaacata 16132662  T
Q  503 gatttccatttgt 515  Q
    ||||  |||||||    
T  16132663 gattctcatttgt 16132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 400 - 546
Target Start/End: Original strand, 25943283 - 25943429
Alignment:
Q  400 gtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaac 499  Q
    |||||||||||||||||||||||||| |  |||||  |||| | ||| |||||||||||||||||||| |||| |||   | |||||||||||| |||||    
T  25943283 gtcacgtcagattatatggtgtattgcacgtttgctgataatgcgtgccattatatctttatttattgtaattttgtttttgattaaatcaaaattaaac 25943382  T
Q  500 atagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||  |||||||||| || |||||| ||| | || ||||||||    
T  25943383 atagattctcatttgtgcaataagattgaaatttctcttaatatttt 25943429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 501
Target Start/End: Original strand, 421526 - 421579
Alignment:
Q  448 cattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||||||||||| | ||||||||||||||| | |||||||||||| |||||||    
T  421526 cattatatctttactaattgcaattgtgtccttgattaaatcaaaattaaacat 421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 501
Target Start/End: Complemental strand, 21264010 - 21263907
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    ||||||| ||| ||||||  |||||||||| |||||   |||  ||||  || ||||| |||| ||||||||||||||||| | |||||||||||| |||    
T  21264010 atgtcacatcaaattataatgtgtattgtacatttgttcatatggtgtaccactatatttttacttattgcaattgtgtccttgattaaatcaaaattaa 21263911  T
Q  498 acat 501  Q
    ||||    
T  21263910 acat 21263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 375
Target Start/End: Complemental strand, 10182189 - 10182139
Alignment:
Q  325 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaa 375  Q
    ||||||||| ||||||||| || |||||| |||||||| ||||||||||||    
T  10182189 aggaaaattctatggtgaagtcatgaaaatgacttttttggtgaagttaaa 10182139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 23994759 - 23994721
Alignment:
Q  235 tattttgtcacgttaattaatgaatataacaagtttttt 273  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  23994759 tattttgtcacgtcaattaatgaatataacaagtatttt 23994721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 397 - 546
Target Start/End: Original strand, 19631831 - 19631980
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    |||||||||| |||||||||||||||||| | |||||||||||| |||| |||||||||||||| |||||||||| ||||| || |||||||||||| ||    
T  19631831 catgtcacgttagattatatggtgtattgcacatttgcctataaggtgtttcattatatctttacttattgcaatcgtgtctctgattaaatcaaaatta 19631930  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    || ||| |||  ||||||||||||| |||||| |||||||| ||||||||    
T  19631931 aaaataaattctcatttgtgcactaagattgaaattcccctcaatatttt 19631980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 34993911 - 34994062
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||||| |||||||||||||||||||| | ||||| | |||| || ||| |||||||||||| ||||| ||||||||||| | ||||||||||||     
T  34993911 ttcatgtcacatcagattatatggtgtattgcacatttgtccataatgtatgttattatatctttacttattacaattgtgtccttgattaaatcaaaat 34994010  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||  ||||| ||||||| |||||| |||||||| ||||||||    
T  34994011 taaacatagattctcatttatgcactaagattgaaattccccttaatatttt 34994062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 397 - 537
Target Start/End: Complemental strand, 11084118 - 11083980
Alignment:
Q  397 catgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagta 496  Q
    ||||||||||||  ||||||||||||||  | ||||||| |||| ||||||||||||||||||| |||||||||||||||| || |||||||||||| ||    
T  11084118 catgtcacgtca--ttatatggtgtattacacatttgcccataaggtgtgtcattatatctttacttattgcaattgtgtctctgattaaatcaaaatta 11084021  T
Q  497 aacatagatttccatttgtgcactatgattgagattcccct 537  Q
    ||||||||||  ||||||| || || |||||| ||||||||    
T  11084020 aacatagattctcatttgttcattaagattgaaattcccct 11083980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 395 - 535
Target Start/End: Complemental strand, 26301891 - 26301753
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||||||||  ||||||| ||||||| ||||||  | ||||  |||||||||||||||||| ||||||||||||||||||| ||||||||||||     
T  26301891 ttcatgtcacgtca--ttatatgatgtattgcatatttatccataagatgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaat 26301794  T
Q  495 taaacatagatttccatttgtgcactatgattgagattccc 535  Q
    ||||||||||||  |||||||| |||| |||||| ||||||    
T  26301793 taaacatagattctcatttgtgtactaagattgaaattccc 26301753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 415 - 546
Target Start/End: Original strand, 30341124 - 30341255
Alignment:
Q  415 atggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttg 514  Q
    ||||||||||||| ||||||| ||||  |||||||||||||||| | ||||||||||||||| | | |||||||||||| |||| ||||||| ||||| |    
T  30341124 atggtgtattgtacatttgcccataagttgtgtcattatatcttcacttattgcaattgtgttcatgattaaatcaaaattaaatatagattcccattag 30341223  T
Q  515 tgcactatgattgagattcccctgaatatttt 546  Q
    ||||||| |||||| |||||||| ||||||||    
T  30341224 tgcactaagattgaaattccccttaatatttt 30341255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 546
Target Start/End: Original strand, 4104182 - 4104247
Alignment:
Q  481 aattaaatcaaaagtaaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||| |||||||| ||| |||||||||||||| |||||| |||| ||| ||||||||    
T  4104182 aattaaatcaaaattaaacataaattcccatttgtgcactaagattgaaattctccttaatatttt 4104247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 325 - 537
Target Start/End: Complemental strand, 4108961 - 4108740
Alignment:
Q  325 aggaaaattttatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatattt-----------tcatgtcacgtcagatta 413  Q
    ||||||||||||||||||| || |||||| |||||||| ||| |||||||||  | ||||| |||||||||           | ||| |||||||  |||    
T  4108961 aggaaaattttatggtgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaattaatgccacgtca--tta 4108864  T
Q  414 tatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccattt 513  Q
    |||||||||||| | ||||||| |||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||  |||||    
T  4108863 tatggtgtattgcacatttgcccataaggtgtgtcgttatatctttacttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcattt 4108764  T
Q  514 gtgcactatgattgagattcccct 537  Q
    ||||||||  ||||| ||||||||    
T  4108763 gtgcactaaaattgaaattcccct 4108740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 396 - 546
Target Start/End: Complemental strand, 6267472 - 6267322
Alignment:
Q  396 tcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagt 495  Q
    ||||| |||||||| |||| ||||||||| || ||||  |||||| |||||| |||||||||||| ||||||||||| ||||| | |||||||||||| |    
T  6267472 tcatgccacgtcaggttatttggtgtattatacatttatctataaggtgtgttattatatctttacttattgcaattatgtccttgattaaatcaaaatt 6267373  T
Q  496 aaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    |||||||||||| ||||||||||||| |||||| |||||||| ||||||||    
T  6267372 aaacatagatttgcatttgtgcactaagattgaaattccccttaatatttt 6267322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 398 - 535
Target Start/End: Original strand, 3038489 - 3038626
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaa 497  Q
    ||||||||||||||||||  |||||||| | || || | |||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||    
T  3038489 atgtcacgtcagattatacagtgtattgcacatctgtccataaggtgtgtcattatatctttacttattgcaattgtgtccctgattaaatcaaaattaa 3038588  T
Q  498 acatagatttccatttgtgcactatgattgagattccc 535  Q
    || |||||| |||||| ||||||| |||||| ||||||    
T  3038589 acttagattcccatttatgcactaagattgaaattccc 3038626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 395 - 546
Target Start/End: Original strand, 7290799 - 7290950
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||||||||||||||||||| |||||  | |||| || ||||  ||| | |||||||||||| ||||||||||||| | ||| ||||||||||||     
T  7290799 ttcatgtcacgtcagattatatggcgtattagacattttcccataagatgtattattatatctttacttattgcaattgtattcctgattaaatcaaaat 7290898  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    || |||||||||| ||||||||||||| |||||| ||||| || ||||||||    
T  7290899 tagacatagattttcatttgtgcactaagattgaaattcctcttaatatttt 7290950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 402 - 546
Target Start/End: Complemental strand, 18756628 - 18756484
Alignment:
Q  402 cacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||||| |||||||||| ||||| | ||||| ||||||  |||||||||||||||||| ||||||||||||||||| | ||| ||| |||||||| |||    
T  18756628 cacgtcaaattatatggtctattgcacatttgtctataagatgtgtcattatatctttacttattgcaattgtgtccatgattcaattaaaagtaagcat 18756529  T
Q  502 agatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    | ||| || ||||||||||| ||||   |||||||| ||||||||    
T  18756528 atattcccctttgtgcactaagattttaattccccttaatatttt 18756484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 462 - 537
Target Start/End: Complemental strand, 23176687 - 23176612
Alignment:
Q  462 ttattgcaattgtgtccctaattaaatcaaaagtaaacatagatttccatttgtgcactatgattgagattcccct 537  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||  ||||||||||||| |||||| ||||||||    
T  23176687 ttattgcaattgtgtccctgattaaatcaaaattaaacatagattctcatttgtgcactaagattgaaattcccct 23176612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 488
Target Start/End: Complemental strand, 30381079 - 30380989
Alignment:
Q  398 atgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaat 488  Q
    ||||||||||||||||||| || ||||| |||||| | |||||  |||||||||||||||||| |||||  ||||||| |||| |||||||    
T  30381079 atgtcacgtcagattatatcgtatattgcatatttacttataagatgtgtcattatatctttacttattataattgtgcccctgattaaat 30380989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 500
Target Start/End: Complemental strand, 35735933 - 35735844
Alignment:
Q  410 attatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaaca 500  Q
    |||||||||||||||| | ||||||  |||| ||||| || ||||||||||  |||| ||||||||| ||| ||||||| |||| ||||||    
T  35735933 attatatggtgtattgcacatttgctcataaggtgtgccactatatctttacctattacaattgtgt-cctgattaaataaaaattaaaca 35735844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 23176811 - 23176742
Alignment:
Q  327 gaaaattt-tatggtgaaatcgtgaaaacgactttttaggtgaagttaaattgctaatcaatgaatattt 395  Q
    |||||||| ||||||||| || |||||| |||||||| |||||||||||||  | ||||| |||||||||    
T  23176811 gaaaatttctatggtgaagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatattt 23176742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 395 - 546
Target Start/End: Complemental strand, 24785 - 24635
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    |||||||||||||||||||||||||||||||   ||||||| |||| || ||| ||||||| |||| ||||| ||||||||||||| ||||||||||||     
T  24785 ttcatgtcacgtcagattatatggtgtattgcgcatttgcccataaggtatgttattatatatttacttattccaattgtgtccctgattaaatcaaaa- 24687  T
Q  495 taaacatagatttccatttgtgcactatgattgagattcccctgaatatttt 546  Q
    ||||||||||||  ||||||||||||| |||||| ||| |||| ||||||||    
T  24686 taaacatagattctcatttgtgcactaagattgaaatttcccttaatatttt 24635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 395 - 515
Target Start/End: Original strand, 5670 - 5790
Alignment:
Q  395 ttcatgtcacgtcagattatatggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaag 494  Q
    ||||||||| || |||||||||||||||||| | |||||||||||| |||||||||||||| |||  ||||||||||| ||||||| ||||||||||||     
T  5670 ttcatgtcatgttagattatatggtgtattgcacatttgcctataaggtgtgtcattatatatttccttattgcaattatgtccctcattaaatcaaaat 5769  T
Q  495 taaacatagatttccatttgt 515  Q
    ||||||| ||||  |||||||    
T  5770 taaacatggattcgcatttgt 5790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 498
Target Start/End: Complemental strand, 12113 - 12031
Alignment:
Q  416 tggtgtattgtatatttgcctataaagtgtgtcattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaa 498  Q
    |||||||||| ||||||| | ||||  ||||||||||||| |||| ||||||||||||||| ||| |||||||||||| ||||    
T  12113 tggtgtattgcatatttgtccataagatgtgtcattatatatttacttattgcaattgtgttcctgattaaatcaaaattaaa 12031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 448 - 501
Target Start/End: Complemental strand, 9046 - 8993
Alignment:
Q  448 cattatatctttatttattgcaattgtgtccctaattaaatcaaaagtaaacat 501  Q
    ||||||||||||| | ||||||||||||||| | |||||||||||| |||||||    
T  9046 cattatatctttactaattgcaattgtgtccttgattaaatcaaaattaaacat 8993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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