View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_1 (Length: 844)
Name: NF13900_low_1
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_1 |
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| [»] scaffold0771 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 22 - 712
Target Start/End: Original strand, 54618428 - 54619120
Alignment:
| Q |
22 |
tgaagtacatagcctatatattaattgtctgtatacttctccttaatataaataaaatcatatcaatacatcttaactccattctcctttcttttacaca |
121 |
Q |
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| T |
54618428 |
tgaagtacatagcctatatattaattgtctgtatacttctccttaatataaataaaatcatatcaatacatcttaacttcattctcatttcttttacaca |
54618527 |
T |
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| Q |
122 |
ttcaaattagatatacatatgttaaaatgcaaaacacagatcgatatttattaacacaatctttgtgtagcttaactagtaagttataatcgattaacaa |
221 |
Q |
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| T |
54618528 |
ttcaaattagatatacatatgttaaaatgcaaaacacagatcgatatttattaacacaatctttgtgtagcttaactagtaagttataatcgattaacaa |
54618627 |
T |
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| Q |
222 |
acatatggtggacataagtggtagatgtttcagtcccttaataatttagtttaaggttcgattcccgaccgatgcgtataaaaaacataaattatattct |
321 |
Q |
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| T |
54618628 |
acatatggtggacataagtggtagatgtttcagtcccttaataatttagtttaaggtttgattcccgaccgatgcgtataaaaaacataaattatatcct |
54618727 |
T |
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| Q |
322 |
taaatgggtctcaattatctcgaagaattaatcttcacaattacgttcagatgataccttggtttacnnnnnnnttataatctgtaagaacaactagtaa |
421 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
54618728 |
taaatggatctcaattatctcgaagaattaatcttcacaattacgttcagatgataccttggtttacaaaaaaattataatctgtaagaacaactagtaa |
54618827 |
T |
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| Q |
422 |
caaaatgataaaagaatcattagt-----nnnnnnnnnnngaataaaagaatcataaatcgcaatacaatgaacacaatttttgtttacgcaaaccggcc |
516 |
Q |
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| T |
54618828 |
caaaatgataaaagaatcattagtaaaaaaaaagaaaaaagaataaaagaatcataaatcgcaatacaatgaacacaatctttgtttacgcaaaccggcc |
54618927 |
T |
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| Q |
517 |
aagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgctgaaccgtgaaagcgatagccctcgcaccccag |
616 |
Q |
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| T |
54618928 |
aagtgtgcctacattcgtgactacatagtagctatacttatgatctatattccaacaattttcatgctgaaccgtgacagcga---ccctcgcaccccag |
54619024 |
T |
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| Q |
617 |
tcgcctcctacaacaaccaattggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttcactacaatagcttacctcccct |
712 |
Q |
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| T |
54619025 |
tcgcctcctacaacaaccaattggacctaacacacgttttgaccaaacacaagggcaggggcagagggagcttcactgcaatagcttacctcccct |
54619120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 705 - 837
Target Start/End: Original strand, 54619520 - 54619648
Alignment:
| Q |
705 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtttgttgtatgattcaacttatttcatctgcat |
804 |
Q |
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| T |
54619520 |
cctcccctgccccttgcccctcttttgtgcctatgagtgatactcaaacataatcacttgaatatagtctgttgtatgattcaacttatttcatctgcat |
54619619 |
T |
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| Q |
805 |
tagtccaccctcaccttagattgagtattatct |
837 |
Q |
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| T |
54619620 |
tagtccacc----cctcagattgagtattatct |
54619648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 642 - 688
Target Start/End: Complemental strand, 13951107 - 13951061
Alignment:
| Q |
642 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
688 |
Q |
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| T |
13951107 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
13951061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 642 - 688
Target Start/End: Complemental strand, 3247 - 3201
Alignment:
| Q |
642 |
cctaacacacgttttggccaaacacaagggcaggggcggagggagct |
688 |
Q |
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| T |
3247 |
cctaacacacgtttgggtcaaacgcaagggtaggggcggagggagct |
3201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 634 - 692
Target Start/End: Complemental strand, 6938345 - 6938287
Alignment:
| Q |
634 |
caattggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttcac |
692 |
Q |
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| T |
6938345 |
caattgggactaacacacgtttgggccaaactcaagggcaggagcagagggagtttcac |
6938287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 690
Target Start/End: Complemental strand, 39129349 - 39129296
Alignment:
| Q |
637 |
ttggacctaacacacgttttggccaaacacaagggcaggggcggagggagcttc |
690 |
Q |
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| T |
39129349 |
ttgggcctaacacacgtttgacccaaacacaagggcatgggtggagggagcttc |
39129296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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