View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_10 (Length: 532)
Name: NF13900_low_10
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 13 - 515
Target Start/End: Complemental strand, 39310950 - 39310448
Alignment:
| Q |
13 |
aagaatatcaattggaggacaaagttacttgctcgtcgtaattttatctgttgaacacaattcttgttactactgagaatcagtaaacaagttgaattca |
112 |
Q |
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| T |
39310950 |
aagaatatgaattggagggcaaagttacttgctcatcgtaattttatctgttgaacacaattcttgttactactgagaatcagtaaacaagttgaattca |
39310851 |
T |
|
| Q |
113 |
tctcttttacagtaagagtaacatatcatttgtttatatgcttcacgaacccatgtgtcaaccttactgaatagactttgtgatttgcagatatgcaaag |
212 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39310850 |
tcttctttacagtaagagtaacatatcatttgtttatatgcttcacgaacccatgtgtcaaccttgctgaatagactttgtgatttgcagatatgcaaag |
39310751 |
T |
|
| Q |
213 |
catcctgccttgctgggaattgagcttttgaatgaaccatcagctggcacagtttctttagatattttaacttcgtattacaagcaaggctaccaaatcg |
312 |
Q |
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| T |
39310750 |
catcctgccttgctgggaattgagcttttgaatgaaccatcagctggcacagtttctttagatattttaacttcgtattacaagcaaggctaccaaatcg |
39310651 |
T |
|
| Q |
313 |
ttcggaaatattcatcgtcagcttatgtgataatgtgccagagaattggcaatgcggatcctttggagctttatcaagccgacataggatctaccaactt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39310650 |
ttcggaaatattcatcgtcagcttatgtgataatgtgccaaagaattggcaatgcggatcctttggagctttatcaagccgacataggatctaccaactt |
39310551 |
T |
|
| Q |
413 |
agttttggatttgcatttctacaacctctttgacacattctttgttaatatgagtgctggtgataatgtacaatacatatacaaaagtcgggaaggtctg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
39310550 |
agttttggatttgcatttctacaacctctttgacacattctttgttaatatgagtgctggtgataatgtgcaatacatatacaaaagtcgggaaggtctg |
39310451 |
T |
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| Q |
513 |
ttg |
515 |
Q |
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| T |
39310450 |
ttg |
39310448 |
T |
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