View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13900_low_12 (Length: 504)

Name: NF13900_low_12
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13900_low_12
NF13900_low_12
[»] chr5 (6 HSPs)
chr5 (59-373)||(11335599-11335917)
chr5 (451-504)||(11335177-11335230)
chr5 (257-350)||(24136585-24136679)
chr5 (1-55)||(11335995-11336049)
chr5 (451-503)||(11335289-11335341)
chr5 (451-504)||(11335215-11335269)
[»] chr6 (5 HSPs)
chr6 (273-350)||(21861811-21861888)
chr6 (275-350)||(9402981-9403056)
chr6 (273-350)||(13167196-13167273)
chr6 (457-504)||(22860895-22860942)
chr6 (457-504)||(18981357-18981405)
[»] chr4 (2 HSPs)
chr4 (273-311)||(16870260-16870298)
chr4 (456-504)||(16871166-16871216)
[»] chr3 (2 HSPs)
chr3 (273-338)||(50295310-50295375)
chr3 (457-500)||(50295884-50295928)
[»] chr2 (1 HSPs)
chr2 (261-308)||(32290392-32290441)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 59 - 373
Target Start/End: Complemental strand, 11335917 - 11335599
Alignment:
Q  59 cataattgggaatatatagaggaatcatattttgtttgtggattttggagtcagatttgcatccgattattctcctt---ttcattattcttttaattta 155  Q
    ||||||||||||||||| ||||||| | ||||||||||||| ||||||||||||| ||||| ||||||||||| |||   |||||| |||||||||||||    
T  11335917 cataattgggaatatatggaggaattagattttgtttgtgggttttggagtcagacttgcagccgattattcttcttcttttcattgttcttttaattta 11335818  T
Q  156 atcaaggttggtggttctttttgcttgagttttatgtttgggctgatctccnnnnnnnggtttatttacttgagtctagtaatccgtttgtgagnnnnnn 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||       ||||||||||| ||||||||||||||||||||||||          
T  11335817 atcaaggttggtggttctttttgcttgagttttatgtttgggccgatctcctttttttggtttatttacgtgagtctagtaatccgtttgtgagtttttt 11335718  T
Q  256 nagtcttcgtgtgtttatgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgtttag-tc 354  Q
     ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |     
T  11335717 tagtcttcgtgtgtttctgtatttgtgtttggttaattggttgttcgtctctgtctgactctagttgctttggttcaacttgttttggtttgtttagttt 11335618  T
Q  355 ggttcgttttggtgcttca 373  Q
    |||||||||||||| ||||    
T  11335617 ggttcgttttggtgtttca 11335599  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 11335230 - 11335177
Alignment:
Q  451 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11335230 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgattg 11335177  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 350
Target Start/End: Original strand, 24136585 - 24136679
Alignment:
Q  257 agtcttcgtgtgttta--tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 350  Q
    |||||||||||||||   |||||||||||||||||||||||||||| |||| |||||| || | |||||||| ||||| ||||| |||||| ||||    
T  24136585 agtcttcgtgtgtttcattgtgtttgtgtttggttaattggttgtttgtctatgtctgtct-tggttgctttggttcagcttgtcttggttcgttt 24136679  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 11336049 - 11335995
Alignment:
Q  1 ggtggatttgaaattgccnnnnnnngttgtttgcttttatggctacatttggatt 55  Q
    ||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  11336049 ggtggatttgaaattgcctttttgtgttgtttgcttttatggctacatttggatt 11335995  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 503
Target Start/End: Complemental strand, 11335341 - 11335289
Alignment:
Q  451 ttctcctgattgattgctttgcacttctcaccttttgattcttctgattgatt 503  Q
    |||| |||||||||||| ||||||||||| |||||| |||||| |||||||||    
T  11335341 ttcttctgattgattgcattgcacttctccccttttcattcttttgattgatt 11335289  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 11335269 - 11335215
Alignment:
Q  451 ttctcctgattgattgctttgcacttctcacctt-ttgattcttctgattgattg 504  Q
    ||||||| |||||||||||||||||||||  ||| |||||||| |||||||||||    
T  11335269 ttctccttattgattgctttgcacttctcctcttattgattctcctgattgattg 11335215  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 21861811 - 21861888
Alignment:
Q  273 tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 350  Q
    ||||||||||||||||||||||||||||||||| ||| || |||| |||||||| | ||| ||||| |||||| ||||    
T  21861811 tgtgtttgtgtttggttaattggttgttcgtctatgtatgtctctggttgctttggctcagcttgtcttggttcgttt 21861888  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 9402981 - 9403056
Alignment:
Q  275 tgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 350  Q
    ||||||||||||||||||||||||||| ||| ||| ||  ||  |||||||| ||||||||||| |||||| ||||    
T  9402981 tgtttgtgtttggttaattggttgttcctctttgtttgtttcgggttgctttggttcaacttgtcttggttcgttt 9403056  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 350
Target Start/End: Original strand, 13167196 - 13167273
Alignment:
Q  273 tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgttttggtttgttt 350  Q
    ||||||||| ||||||||||||||||||||| | ||| || |||| |||||||| | ||| ||||| |||||| ||||    
T  13167196 tgtgtttgtatttggttaattggttgttcgtttatgtttgtctctggttgctttgggtcagcttgtcttggttcgttt 13167273  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 457 - 504
Target Start/End: Original strand, 22860895 - 22860942
Alignment:
Q  457 tgattgattgctttgcacttctcaccttttgattcttctgattgattg 504  Q
    ||||||||||| ||||||||||| ||||||| |||||| |||||||||    
T  22860895 tgattgattgcattgcacttctccccttttggttcttccgattgattg 22860942  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 504
Target Start/End: Original strand, 18981357 - 18981405
Alignment:
Q  457 tgattgattgctttgcacttct-caccttttgattcttctgattgattg 504  Q
    ||||||||||| |||||||| | | ||||||||||||||||||||||||    
T  18981357 tgattgattgcattgcactttttctccttttgattcttctgattgattg 18981405  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 16870260 - 16870298
Alignment:
Q  273 tgtgtttgtgtttggttaattggttgttcgtctctgtct 311  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  16870260 tgtgtttgtgtttggttaattggttgttcgtctatgtct 16870298  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 504
Target Start/End: Original strand, 16871166 - 16871216
Alignment:
Q  456 ctgattgattgctttgcacttctcacc--ttttgattcttctgattgattg 504  Q
    |||||||||||| ||||||||||| ||  ||||||||||||||||||||||    
T  16871166 ctgattgattgcattgcacttctctccccttttgattcttctgattgattg 16871216  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 50295310 - 50295375
Alignment:
Q  273 tgtgtttgtgtttggttaattggttgttcgtctctgtctgactctagttgcttttgttcaacttgt 338  Q
    |||||||||||||| ||||||||||||| |||| |||||| || | |||||||| ||||| |||||    
T  50295310 tgtgtttgtgtttgattaattggttgtttgtctatgtctgtctatggttgctttggttcagcttgt 50295375  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 500
Target Start/End: Original strand, 50295884 - 50295928
Alignment:
Q  457 tgattgattgctttgcacttctcac-cttttgattcttctgattg 500  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||    
T  50295884 tgattgattgcattgcacttctccctcttttgattcttctgattg 50295928  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 32290392 - 32290441
Alignment:
Q  261 ttcgtgtgtttat--gtgtttgtgtttggttaattggttgttcgtctctg 308  Q
    |||||||||||||  ||||||||| ||| |||||||||||||||||||||    
T  32290392 ttcgtgtgtttatttgtgtttgtgcttgattaattggttgttcgtctctg 32290441  T

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