View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_13 (Length: 502)
Name: NF13900_low_13
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 44639969 - 44640124
Alignment:
| Q |
1 |
tcttatactctctgtgtgttccattccacaactcaataaatctttaaggttttgagctatattctagaagtacattagaaaattaaaatggtcttcaaat |
100 |
Q |
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| T |
44639969 |
tcttatactctctctgtgttccattccacaactcaataaatctttaaggttttgagctatattctagaagtacattagaaaattaaaatggtcttcaaat |
44640068 |
T |
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| Q |
101 |
tagtaagtagtaactatcgaaccacaattaacaccgaactaaccacatcatgccta |
156 |
Q |
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| T |
44640069 |
tagtaagtagtaactatcgaaccacaattaacaccgaactaaccacatcatgccta |
44640124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 4930550 - 4930509
Alignment:
| Q |
211 |
ggagatataaaatatataatggattgatatgagaaattgaat |
252 |
Q |
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| T |
4930550 |
ggagatgtacaatatataatggatttatatgagaaattgaat |
4930509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 27646238 - 27646190
Alignment:
| Q |
211 |
ggagatataaaatatataatggattgatatgagaaattgaatcaatttt |
259 |
Q |
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| T |
27646238 |
ggagatataaaatatatagtggatgaatatgagaaattgaatcaatttt |
27646190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 260
Target Start/End: Complemental strand, 27555982 - 27555941
Alignment:
| Q |
219 |
aaaatatataatggattgatatgagaaattgaatcaattttt |
260 |
Q |
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| T |
27555982 |
aaaatatatagtggattgatatgaaaaattaaatcaattttt |
27555941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 15654473 - 15654418
Alignment:
| Q |
212 |
gagatata-aaatatataatggattgatatgagaaattgaatcaatttttaaaatt |
266 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
15654473 |
gagatatacaaatatatagtggattgatatgagaaattgaatcaattctcaaaatt |
15654418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 15883303 - 15883351
Alignment:
| Q |
211 |
ggagatataaaatatataatggattgatatgagaaattgaatcaatttt |
259 |
Q |
| |
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|||||| || ||||||||||| ||| |||||||||||||||| |||||| |
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| T |
15883303 |
ggagatgtacaatatataatgaatttatatgagaaattgaataaatttt |
15883351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 266
Target Start/End: Original strand, 17461554 - 17461607
Alignment:
| Q |
213 |
agatataaaatatataatggattgatatgagaaattgaatcaatttttaaaatt |
266 |
Q |
| |
|
||||||| |||||||| | |||| ||||||||||||||||||||||| |||||| |
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|
| T |
17461554 |
agatatacaatatatagtagattaatatgagaaattgaatcaattttcaaaatt |
17461607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 13923047 - 13923095
Alignment:
| Q |
211 |
ggagatataaaatatataatggattgatatgagaaattgaatcaatttt |
259 |
Q |
| |
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| T |
13923047 |
ggagatgtacaatatataatggatttatatgagaaattgaataaatttt |
13923095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 36648328 - 36648277
Alignment:
| Q |
215 |
atataaaatatataatggattgatatgagaaattgaatcaatttttaaaatt |
266 |
Q |
| |
|
|||||||||||| | |||| | ||||||||||||||||||||||| |||||| |
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| T |
36648328 |
atataaaatatacagtggacttatatgagaaattgaatcaattttaaaaatt |
36648277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 106
Target Start/End: Original strand, 19873410 - 19873446
Alignment:
| Q |
70 |
gtacattagaaaattaaaatggtcttcaaattagtaa |
106 |
Q |
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|||||| ||||||| |||||||||||||||||||||| |
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| T |
19873410 |
gtacatcagaaaataaaaatggtcttcaaattagtaa |
19873446 |
T |
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