View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_15 (Length: 468)
Name: NF13900_low_15
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 12666526 - 12666944
Alignment:
| Q |
18 |
tgtttcactatagaaagtttcaatttttaagttaatccaacaaattacatcaaatgggtatcaatttttactcgattttcaa-ttaaaaaattggggaaa |
116 |
Q |
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| T |
12666526 |
tgtttcactatagaaagttttaatttttaagttaatccaacaaattacctcaactgggtatcaatttttactcgaatttcaagttaaaaaattggggaaa |
12666625 |
T |
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| Q |
117 |
atcgaagctaaagtcattggatttgatgttggttgtggtgatacgaagtttcgacgaggaaaagaattcggcggtggtgaaatggatttgtgttgtggtg |
216 |
Q |
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| T |
12666626 |
atcgaagctaacgtcattgaatttgatgttggctgtggtgatacggagttccgacgaggaaaagaattcggcggtggtgaaatggatatgtgttgtgttg |
12666725 |
T |
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| Q |
217 |
tttctttgtattttcaaaaataaataaatatggtatctatgtattgtgttgtttcgttggatttgtatgttgtgttgagagaagaataatgaaggaattc |
316 |
Q |
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| T |
12666726 |
tttctttgtattttcaaa---aaaaaaatatggtatctatgtattgtgttgtttcgttggatttgtatgttgtgttgagagaagaataatgaaggaattc |
12666822 |
T |
|
| Q |
317 |
taagnnnnnnnnttaatgctttttgggggagaatattacagtttggtttaattatagttgttgttgcttttgtgtttctgggttttatgaattcatgaat |
416 |
Q |
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| T |
12666823 |
tcaggaaaaaaattaatgctttttgggggagaatattacagtttggtttaattagagttgttgttggttttgtgtttctgggttttatgaattcatgaat |
12666922 |
T |
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| Q |
417 |
ttatgaatttctttttctgtga |
438 |
Q |
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| T |
12666923 |
ttatgaatttctttttctgtga |
12666944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 52077586 - 52077629
Alignment:
| Q |
395 |
tgggttttatgaattcatgaatttatgaatttctttttctgtga |
438 |
Q |
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| T |
52077586 |
tgggttttatgagttcatgaatttatgaatttctttttcagtga |
52077629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 667787 - 667373
Alignment:
| Q |
18 |
tgtttcactatagaaagtttcaatttttaagttaatccaacaaattacatcaaatgggtatcaatttttactcgattttcaattaaaaaattggggaaaa |
117 |
Q |
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| T |
667787 |
tgtttcactatagaaagtttcaatttttaagttaatccaacaaattacctcaactgggtatcaatttttactcgaatttcagttaaaaaattggggaaaa |
667688 |
T |
|
| Q |
118 |
tcgaagctaaagtcattggatttgatgttggttgtggtgatacgaagtttcgacgaggaaaagaattcggcggtggtgaaatggatttgtgttgtggtgt |
217 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||| |
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| T |
667687 |
tcgaagctaacgtcattggatttgatgttggatgtggtgatacggagttccgacgaggaaaagaattcggcgatggtgaaatggatatgtgttgtgttgt |
667588 |
T |
|
| Q |
218 |
ttctttgtattttcaaaaataaataaatatggtatctatgtattgtgttgtttcgttggatttgtatgttgtgttgagagaagaataatgaaggaattct |
317 |
Q |
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| T |
667587 |
ttctttgtattttaaaaa------aaaaatggtatctatgtattgtgttgtttcgttggatttgtatgttgcgttgagagaagaataatgaaggaattct |
667494 |
T |
|
| Q |
318 |
aagnnnnnnnnttaatgctttttgggggagaatattacagtttggtttaattatagttgttgttgcttttgtgtttctgggttttatgaattcatgaatt |
417 |
Q |
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| T |
667493 |
gaggaaaaaaattaatgctttttgggggagaatattacagtttggtttaattagagttgttgttggttttgtgtttctgggttttatgaattcataaatt |
667394 |
T |
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| Q |
418 |
tatgaatttctttttctgtga |
438 |
Q |
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| T |
667393 |
tatgaatttctttttctgtga |
667373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 117
Target Start/End: Complemental strand, 37961939 - 37961852
Alignment:
| Q |
31 |
aaagtttcaatttttaagttaatccaacaaattacatcaaatgggtatcaatttttactcgattttcaat-taaaaaattggggaaaa |
117 |
Q |
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||||||||||||||||||||||| | |||| |||| |||| |||||||| |||||||||||| ||| | | |||||||||||||||| |
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| T |
37961939 |
aaagtttcaatttttaagttaattctacaatttacctcaactgggtatcgatttttactcgaattttagtgaaaaaaattggggaaaa |
37961852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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