View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_16 (Length: 457)
Name: NF13900_low_16
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 34 - 388
Target Start/End: Original strand, 33381699 - 33382053
Alignment:
| Q |
34 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaacacggaa |
133 |
Q |
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| T |
33381699 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaaggagattacttatgagatcagccaaaacggaa |
33381798 |
T |
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| Q |
134 |
gttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttg |
233 |
Q |
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| T |
33381799 |
gttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataataatgctcaaactgttttg |
33381898 |
T |
|
| Q |
234 |
aatattattgtacatatgttgagtgacaaagattcaggccaatgnnnnnnnnnnnnnnnnnnnnnnaataatttcataagtgcattaaatttgtatagtt |
333 |
Q |
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| T |
33381899 |
aatattattgtacatatgttgagtgacaaagattcaggccaatgttttgattttgattttgattttaataatttcataagtgcattaaatttatatagtt |
33381998 |
T |
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| Q |
334 |
tacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattatt |
388 |
Q |
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| T |
33381999 |
tacaagaagcaatcgttacgttaagattggccgctcctaactgatacacattatt |
33382053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 24630485 - 24630323
Alignment:
| Q |
115 |
gagatcagccaacacggaagttttcaacttgcaagaaaaataaaactattgattttgaaagaagaaatcaacaccataaattgttggaggaaaacaataa |
214 |
Q |
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| T |
24630485 |
gagatcagcaaacatggaagtcttcaacctgcaagaaaaataaaagtattgattttgtaagaagaaatcaacaccataaattgttggaggaaaacaataa |
24630386 |
T |
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| Q |
215 |
taatgctcaaactgttttgaatattattgtacatatgttgagtgacaaagattcaggccaatg |
277 |
Q |
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| T |
24630385 |
taatgctcaaacagttttgaatattattgtacatatgttgagtgacaaagagttaggccaatg |
24630323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 33061795 - 33061858
Alignment:
| Q |
34 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtga |
97 |
Q |
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| T |
33061795 |
catcatcaacatacaatacgaatggctatcctttatattttaaagcatccctctccttttgtga |
33061858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 33266779 - 33266846
Alignment:
| Q |
318 |
ttaaatttgtatagtttacaagaagcaatcgttacgttaagattggccgctcctaactgatacacatt |
385 |
Q |
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|||| ||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
33266779 |
ttaattttatatagtctacaagaagcaatcattacgttaaggttggccgctcctaactgatacacatt |
33266846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 33404376 - 33404443
Alignment:
| Q |
34 |
catcatcaacatacaatatgaatgactatcctttatattttaaagcatctctctccctttgtgattaa |
101 |
Q |
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|||||||| ||||||| | ||||| ||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
33404376 |
catcatcagcatacaacaagaatggctatcctttatattttaaagcatatctctccatttgtgattaa |
33404443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 385
Target Start/End: Original strand, 33276517 - 33276558
Alignment:
| Q |
344 |
aatcgttacgttaagattggccgctcctaactgatacacatt |
385 |
Q |
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| T |
33276517 |
aatcgttacgttaaggttggccgctcctaactgatacacatt |
33276558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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