View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13900_low_22 (Length: 344)

Name: NF13900_low_22
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13900_low_22
NF13900_low_22
[»] chr3 (17 HSPs)
chr3 (148-334)||(28183455-28183641)
chr3 (148-334)||(28147250-28147440)
chr3 (156-334)||(17746550-17746731)
chr3 (156-334)||(19047870-19048051)
chr3 (155-334)||(27918067-27918249)
chr3 (155-334)||(28081438-28081620)
chr3 (148-334)||(28482216-28482405)
chr3 (179-331)||(28131666-28131821)
chr3 (148-334)||(28511028-28511217)
chr3 (261-334)||(28053300-28053373)
chr3 (261-334)||(28063725-28063798)
chr3 (148-212)||(27974235-27974299)
chr3 (22-83)||(27462616-27462677)
chr3 (273-334)||(28002015-28002076)
chr3 (180-233)||(28001961-28002014)
chr3 (175-212)||(28053220-28053257)
chr3 (175-212)||(28063645-28063682)
[»] scaffold0257 (1 HSPs)
scaffold0257 (148-334)||(17037-17227)
[»] chr7 (1 HSPs)
chr7 (260-334)||(8693716-8693790)
[»] chr2 (1 HSPs)
chr2 (150-211)||(8019591-8019652)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 148 - 334
Target Start/End: Original strand, 28183455 - 28183641
Alignment:
Q  148 tttatgcatgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggtagataactccaat 247  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||  |||||||| ||||||||    
T  28183455 tttatgcatgtgtttatttcccattcatttattgcaggaattgagtgggaatgtcgaacatttttgtgctttggaaagtctcgaggtagatcactccaat 28183554  T
Q  248 gtagaagatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    ||||||  ||||||| || |  || |||||||||||| ||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  28183555 gtagaaagtatctttcgtgtcgatgaaataaatgaacggcaaatgaacttagctttggaagacattgatttggatgttctgcctatg 28183641  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 148 - 334
Target Start/End: Original strand, 28147250 - 28147440
Alignment:
Q  148 tttatgcat-gtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggtag---ataactc 243  Q
    ||||||||| ||||||||||||||||  |||||| |||||||||||||||||||||||  ||||||  |||||||  ||||| | ||||    |||||||    
T  28147250 tttatgcattgtgtttatttcccattcatttattacaggaattgagtgggaatgtggataattttctcgctttggagagactcatggtaacgaataactc 28147349  T
Q  244 caatgtagaagatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    ||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  28147350 caaagtagaaagtatcttttgtctgaatgaaataaatgaacagcaaatgaacttagctttggaagacattgatttggatgttctgcctatg 28147440  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 334
Target Start/End: Complemental strand, 17746731 - 17746550
Alignment:
Q  156 tgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggta---gataactccaatgtaga 252  Q
    |||||||||||| ||||  |||||||||||||||||||||| |||||||||||||||||||||||| || ||| || |||    | ||||| || |||||    
T  17746731 tgtgtttatttctcattcatttattgcaggaattgagtggggatgtggaacattttcgtgctttggaaacactcaatgtaaacaaaaactctaaagtaga 17746632  T
Q  253 agatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    |  ||| |||||||| ||| ||| |||||||||||||||||||||||||||||| |  |||  ||||| |||||||||||||    
T  17746631 aagtatattttgtctcaatgaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcctatg 17746550  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 156 - 334
Target Start/End: Complemental strand, 19048051 - 19047870
Alignment:
Q  156 tgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggta---gataactccaatgtaga 252  Q
    |||||||||||| ||||  |||||||||||||||||||||| |||||||||||||||||||||||| || ||| || |||    | ||||| || |||||    
T  19048051 tgtgtttatttctcattcatttattgcaggaattgagtggggatgtggaacattttcgtgctttggaaacactcaatgtaaacaaaaactctaaagtaga 19047952  T
Q  253 agatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    |  ||| |||||||| ||| ||| |||||||||||||||||||||||||||||| |  |||  ||||| |||||||||||||    
T  19047951 aagtatattttgtctcaatgaaagaaatgaacagcaaatgaacttagctttggaagaaattattttgggtgttctgcctatg 19047870  T

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Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 155 - 334
Target Start/End: Original strand, 27918067 - 27918249
Alignment:
Q  155 atgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggta---gataactccaatgtag 251  Q
    |||||||||||||||||| ||||||| ||||| |||||||||||||| || |||||| | ||||||||||||||   ||||    |||||||||| ||||    
T  27918067 atgtgtttatttcccattcgtttattacaggatttgagtgggaatgtcgagcattttagcgctttgggaagactcgtggtaaataataactccaaagtag 27918166  T
Q  252 aagatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    ||   ||||||||||| ||| ||||||||||||| |||||||| |||| ||||||  | ||| ||||| ||||||||||||||    
T  27918167 aaagcatcttttgtctcaatgaaataaatgaacaacaaatgaaattaggtttggaattcatttatttgaatgttctgcctatg 27918249  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 155 - 334
Target Start/End: Original strand, 28081438 - 28081620
Alignment:
Q  155 atgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggtagataa---ctccaatgtag 251  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||  |||||    | ||||   ||| ||||   |||| | ||||    
T  28081438 atgtgtttatttcccattcatttattgcaggaattgagtgggaatgtggatcattttctcgctttaaagaaacttgttgtatataataactccgaagtag 28081537  T
Q  252 aagatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    ||  |||| ||||||| ||| |||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||||||    
T  28081538 aaagtatcgtttgtctcaatgaaataaatgaacagaaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 28081620  T

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Target: chr3; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 148 - 334
Target Start/End: Complemental strand, 28482405 - 28482216
Alignment:
Q  148 tttatgcatgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggtagataa---ctcc 244  Q
    ||||| |||||||||||||||||||  ||||||| ||||||  ||||||||| ||||  ||||||  |||||||  | ||| | |||| ||||   ||||    
T  28482405 tttatacatgtgtttatttcccattcatttattgtaggaatcaagtgggaatatggataattttctagctttggagacactcatggtaaataataactcc 28482306  T
Q  245 aatgtagaagatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    || ||||||||| |||||||||||||| ||||||||||||| ||| ||| |||||||||| | |  ||||||||| ||||||||||||||    
T  28482305 aaagtagaagatgtcttttgtctgaatgaaataaatgaacaacaactgagcttagctttgaaagaaattgatttgaatgttctgcctatg 28482216  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 28131666 - 28131821
Alignment:
Q  179 ttgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggtaga---taactccaatgtagaagatatcttttgtctgaataaaa 275  Q
    |||||||||||||||||||||||||| |||||||   ||||||  ||||| |  ||| |   ||||||||| ||||||  |||| ||||| | ||| |||    
T  28131666 ttgcaggaattgagtgggaatgtggaccattttctctctttggagagactcatagtaaagaataactccaaagtagaaagtatcatttgtataaatgaaa 28131765  T
Q  276 taaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcct 331  Q
    ||||||||||||||||||||||||||||| | |  ||||||||||||||| |||||    
T  28131766 taaatgaacagcaaatgaacttagctttgaaagacattgatttggatgttttgcct 28131821  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 148 - 334
Target Start/End: Complemental strand, 28511217 - 28511028
Alignment:
Q  148 tttatgcatgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggtagataa---ctcc 244  Q
    ||||| |||||||||||||||||||  ||||||| ||||||  ||||||||| ||||  ||||||  |||||||  | |||   |||| ||||   ||||    
T  28511217 tttatacatgtgtttatttcccattcatttattgtaggaatcaagtgggaatatggataattttctagctttggagacactcttggtaaataataactcc 28511118  T
Q  245 aatgtagaagatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    || ||| ||||| |||||||||||||| ||||||||||||| ||| ||| |||||||||| | |  ||||||||| ||||| ||||||||    
T  28511117 aaagtaaaagatgtcttttgtctgaatgaaataaatgaacaacaactgagcttagctttgaaagacattgatttgaatgttttgcctatg 28511028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 28053300 - 28053373
Alignment:
Q  261 tttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    ||||||||||| || |||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||    
T  28053300 tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 28053373  T

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Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 28063725 - 28063798
Alignment:
Q  261 tttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    ||||||||||| || |||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||    
T  28063725 tttgtctgaatgaattaaatgaacatcaaatgaacttagctttgaaagtcattgatttggatgttctgcctatg 28063798  T

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Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 27974235 - 27974299
Alignment:
Q  148 tttatgcatgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttc 212  Q
    |||||||||||||||||||| |||| ||||| || |||||||||||||||||||||| |||||||    
T  27974235 tttatgcatgtgtttatttctcattcgtttactgtaggaattgagtgggaatgtggatcattttc 27974299  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 27462677 - 27462616
Alignment:
Q  22 tacaatcatcaaggtatccctatttttatatatcttgttttttgtgaatctaatcaatgatt 83  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||| ||| || ||| |||||    
T  27462677 tacaatcatcaaggtatccctatttctatatatcttgttgtttgtaaatatattcagtgatt 27462616  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 334
Target Start/End: Original strand, 28002015 - 28002076
Alignment:
Q  273 aaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    ||||||||||||| |||||||||||||||||| |  ||||||| |||  |||||||||||||    
T  28002015 aaataaatgaacaacaaatgaacttagctttgaaaattattgaattgcttgttctgcctatg 28002076  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 28001961 - 28002014
Alignment:
Q  180 tgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaagg 233  Q
    ||||||||| | |||||||||||||||||||||| ||||| | ||| |||||||    
T  28001961 tgcaggaatcgggtgggaatgtggaacattttcgcgctttagaaagtcttaagg 28002014  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 28053220 - 28053257
Alignment:
Q  175 tttattgcaggaattgagtgggaatgtggaacattttc 212  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  28053220 tttattgcaggaattgagtgggattgtggatcattttc 28053257  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 28063645 - 28063682
Alignment:
Q  175 tttattgcaggaattgagtgggaatgtggaacattttc 212  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  28063645 tttattgcaggaattgagtgggattgtggatcattttc 28063682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 148 - 334
Target Start/End: Original strand, 17037 - 17227
Alignment:
Q  148 tttatgcatgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacattttcgtgctttgggaagacttaaggtaga---taactcc 244  Q
    ||||| |||||||||||||||||||  |||||||||| |||  ||||||||| ||||  ||||||  |||||||  ||||| |  ||| |   |||||||    
T  17037 tttatacatgtgtttatttcccattcatttattgcagcaatctagtgggaatatggataattttctcgctttggagagactcattgtaaagaataactcc 17136  T
Q  245 aatgtagaagatatcttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgtt-ctgcctatg 334  Q
    || ||||||  |||||||||||||||| |||||||||||||||||||||||||||||||| |    ||||||||||||||| |||||||||    
T  17137 aaagtagaaagtatcttttgtctgaatgaaataaatgaacagcaaatgaacttagctttgaaatacattgatttggatgttcctgcctatg 17227  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 8693790 - 8693716
Alignment:
Q  260 ttttgtctgaataaaataaatgaacagcaaatgaacttagctttggacgttattgatttggatgttctgcctatg 334  Q
    |||||| | ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  8693790 ttttgtatcaatgaaataaatgaacagcaaatgaacttagctttggagtttattgatttggatgttcttcctatg 8693716  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 8019591 - 8019652
Alignment:
Q  150 tatgcatgtgtttatttcccattggtttattgcaggaattgagtgggaatgtggaacatttt 211  Q
    |||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||    
T  8019591 tatgcatgtgtttatttcccatttatttattgcaggaattgaggaggaatgtggaacatttt 8019652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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