View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13900_low_30 (Length: 251)

Name: NF13900_low_30
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13900_low_30
NF13900_low_30
[»] chr3 (3 HSPs)
chr3 (1-130)||(54392179-54392308)
chr3 (4-62)||(52694751-52694809)
chr3 (6-109)||(25376298-25376401)
[»] chr4 (2 HSPs)
chr4 (4-96)||(22453572-22453664)
chr4 (4-62)||(43038717-43038775)
[»] chr7 (1 HSPs)
chr7 (4-63)||(22629206-22629265)


Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 54392308 - 54392179
Alignment:
Q  1 tggcgtttaggatggacccatacatgtattggtccatattggatcaagatttttgaccattaaattacacaagtttatagatcttaccatgcattcgctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |||    
T  54392308 tggcgtttaggatggacccatacatgtattggtccatattggatcaagatttctgaccattaaattacacaagcttatagatcttaccatgtattcactc 54392209  T
Q  101 cattatatcggacttcttctactcatgaat 130  Q
    ||||||||||||||||||||||||||||||    
T  54392208 cattatatcggacttcttctactcatgaat 54392179  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 52694809 - 52694751
Alignment:
Q  4 cgtttaggatggacccatacatgtattggtccatattggatcaagatttttgaccatta 62  Q
    ||||||| |||||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  52694809 cgtttagcatggactcatagatgtattggtccatactggatcaagatttctgaccatta 52694751  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 25376298 - 25376401
Alignment:
Q  6 tttaggatggacccatacatgtattggtccatattggatcaagatttttgaccattaaattacacaagtttatagatcttaccatgcattcgctccatta 105  Q
    ||||| |||||| |||| ||||||||||||||| |||| ||| |||| |  |||||| |||| ||||| ||||||||  || ||||||||| || || ||    
T  25376298 tttagcatggactcatagatgtattggtccatactggaccaacatttctatccattagattaaacaagcttatagattctatcatgcattcactgcacta 25376397  T
Q  106 tatc 109  Q
    ||||    
T  25376398 tatc 25376401  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 22453664 - 22453572
Alignment:
Q  4 cgtttaggatggacccatacatgtattggtccatattggatcaagatttttgaccattaaattacacaagtttatagatcttaccatgcattc 96  Q
    ||||||| ||| ||||||  ||||||||||||| |||||| |||||||| ||||||||| |||| ||||||||||||||| ||  ||||||||    
T  22453664 cgtttagcatgcacccatggatgtattggtccagattggaccaagatttatgaccattagattatacaagtttatagatcctataatgcattc 22453572  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 43038717 - 43038775
Alignment:
Q  4 cgtttaggatggacccatacatgtattggtccatattggatcaagatttttgaccatta 62  Q
    ||||||| |||||| |||| ||||||||||||||| ||||||||||||| |||||||||    
T  43038717 cgtttagcatggactcatagatgtattggtccatactggatcaagatttctgaccatta 43038775  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 22629206 - 22629265
Alignment:
Q  4 cgtttaggatggacccatacatgtattggtccatattggatcaagatttttgaccattaa 63  Q
    ||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||||    
T  22629206 cgtttagcatggactcatagatgtattggtccatactggatcaagatttttgaccattaa 22629265  T

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