View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_31 (Length: 248)
Name: NF13900_low_31
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 10452131 - 10451909
Alignment:
| Q |
10 |
ataattctacagtttggttttctgtcctgtgagggctagtgttttttctatatccagagacaaaaaagtattaatttttgggcatcactagttgcaaaac |
109 |
Q |
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| T |
10452131 |
ataattctacagtttggttttctgtcctgtgagggctagtgttttttctatatgcagagacaaaaaagtattaacttttgggcatcactagttgcaaaac |
10452032 |
T |
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| Q |
110 |
ttacggcctgcttataatattaaacctttattttttctgctctatgaaattttggcgtgctctattctgattctaaaattcgaaatgttttaacatgctt |
209 |
Q |
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| T |
10452031 |
ttacggcctgcttataatattaaacctttattttttctgctctatgaatttttgacatgctctattttgattctaaaatttgaaatattttaacatgctt |
10451932 |
T |
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| Q |
210 |
tggagtttttatgaggtgtttac |
232 |
Q |
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| T |
10451931 |
tggagtttttatgagctgtttac |
10451909 |
T |
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Back To:
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 2513122 - 2513182
Alignment:
| Q |
172 |
tattctgattctaaaattcgaaatgttttaacatgctttggag-tttttatgaggtgttta |
231 |
Q |
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| T |
2513122 |
tattcagattctaaaatccaaaatgttttaacatgatttggagatttttatgaggtgttta |
2513182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 231
Target Start/End: Original strand, 48400945 - 48401006
Alignment:
| Q |
171 |
ctattctgattctaaaattcgaaatgttttaacatgctttgga-gtttttatgaggtgttta |
231 |
Q |
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| T |
48400945 |
ctattcggattctaaaatccgaaatgttttaacgtgttttggaggtttttatagggtgttta |
48401006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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