View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_35 (Length: 229)
Name: NF13900_low_35
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 39076226 - 39076443
Alignment:
| Q |
1 |
atgaaaaagtaaaacaagtgcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattg |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39076226 |
atgaaaaagtaaaacaagtgcaggttgaacaaaaagctttttcgattgcacgaacaaatatgaatttgtcttaacaagctaaatgcatggacattaattg |
39076325 |
T |
|
| Q |
101 |
cttaactatataagtcttcattcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaatacaaattagtgcaagtaaatgtttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39076326 |
cttaactatataagtcttcattcagtgttttcttcgcataattgttgagctgcatatacttagtcaattaaaaacaaattagtgcaagtaaatgtttaga |
39076425 |
T |
|
| Q |
201 |
caatgcaatgatgatgtc |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
39076426 |
caatgcaatgatgatgtc |
39076443 |
T |
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