View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_39 (Length: 215)
Name: NF13900_low_39
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 9384585 - 9384768
Alignment:
| Q |
12 |
gtccaagaatataattctaaaacatgaagctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaattttta |
111 |
Q |
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| T |
9384585 |
gtccaataatataattctaaaacatgaagctctcgttcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaattttta |
9384684 |
T |
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| Q |
112 |
ctccacctatgttagcctaatgagctaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatc |
195 |
Q |
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| T |
9384685 |
ctccacctatgttagcctaatgagttaacatattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatc |
9384768 |
T |
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Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 41 - 196
Target Start/End: Original strand, 31947700 - 31947855
Alignment:
| Q |
41 |
ctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaac |
140 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31947700 |
ctctcattcaaacatggattgaattttactacaagatcattctctcatttacaaaaggacattaatttttactctacctatgttagcctaatgagctaac |
31947799 |
T |
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| Q |
141 |
atattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaatct |
196 |
Q |
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| T |
31947800 |
atatttaaacacaacactctattttttaccaaacagctaaatatgcaatctaatct |
31947855 |
T |
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