View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_5 (Length: 631)
Name: NF13900_low_5
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 39190488 - 39190133
Alignment:
| Q |
1 |
taattctcatttcattatcatctttttctctttccaattgaaaatgtttttggaattgaaaaattcaagttttgaggatatatgtagatgatgatcttgt |
100 |
Q |
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| T |
39190488 |
taattctcatttcattatcatcttattcgctttccaatagaaaatgtttt-ggaattgaaaaattcaagttttgaggatatatgtagatgatgatcttgt |
39190390 |
T |
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| Q |
101 |
ttataaatcacactgttaccacttttaatcattgtaaacaaaaagttatattggtaccaatttttgtttgtaacaatattagggtcaaagctgcgatccc |
200 |
Q |
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| T |
39190389 |
ttataaatcacactgttaccacttttaatcattgtaaacaaaaagttacattggtaccgatttttgtttgtaacaatattagggtcaaagctgcgatccc |
39190290 |
T |
|
| Q |
201 |
cagattaaagaatccaagtttattgtgaaacacaggttacgtagatattttatgtgacatgtagacttagagatagtttattaagaaccaa--------- |
291 |
Q |
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| T |
39190289 |
cagattaaagaatccaagtttattgtgaaaca-----taggtagatattttatgtgacatgtagacttagagatagtttattaagaaccaaaattgaatt |
39190195 |
T |
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| Q |
292 |
----aattggagatttatttagtagcaagtccatataacacatgaaattgtgacatgtcata |
349 |
Q |
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| T |
39190194 |
ttacaattggagatttatttagtagcaagtccatataacacatgaaattgtgacatgtcata |
39190133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 404 - 615
Target Start/End: Complemental strand, 28461032 - 28460821
Alignment:
| Q |
404 |
attttagttttggaaatcataaaattgttcttataaagcgattaatgatattaaggatcattgtaattaatatgataaatatttatttttaatggatttt |
503 |
Q |
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| T |
28461032 |
attttagttttggaaatcataaaattgttcttataaggcaattaatgatatcaaggatcattgtaattaatatgataaatatttatttttgatggatttt |
28460933 |
T |
|
| Q |
504 |
atattttggttgaattgaaatagtttgaagattgagatttgaaacatagaagtaagatggattttgcttatggacctggaagaaatcatctctttgttcc |
603 |
Q |
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| T |
28460932 |
atattttggttgaattgaaatagcttgaagattgagatttgaagcatagaagtaagatggattttgcttatggacctggaagaaaccatctctttgttcc |
28460833 |
T |
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| Q |
604 |
tgggcctaccaa |
615 |
Q |
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|||||||||||| |
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| T |
28460832 |
tgggcctaccaa |
28460821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 404 - 615
Target Start/End: Complemental strand, 39190051 - 39189836
Alignment:
| Q |
404 |
attttagttttggaaatcataaaattgttcttata----aagcgattaatgatattaaggatcattgtaattaatatgataaatatttatttttaatgga |
499 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39190051 |
attttagttttggaaatcataaaatcgttcttatatataaagcgattaatgatatcaaggatcattgtaattaatatgataaatatttatttttaatgga |
39189952 |
T |
|
| Q |
500 |
ttttatattttggttgaattgaaatagtttgaagattgagatttgaaacatagaagtaagatggattttgcttatggacctggaagaaatcatctctttg |
599 |
Q |
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| T |
39189951 |
ttttatattttggttgaattgaaatagtttgaagattgagatttgaagcatagaaggaagatggattttgcttatggacctggaagaaatcatctctttg |
39189852 |
T |
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| Q |
600 |
ttcctgggcctaccaa |
615 |
Q |
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|||||||||||||||| |
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| T |
39189851 |
ttcctgggcctaccaa |
39189836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 463 - 615
Target Start/End: Original strand, 41260183 - 41260333
Alignment:
| Q |
463 |
attgtaattaatatgataaatatttatttttaatggattttatattttggttgaattgaaatagtttgaagattgagatttgaaacatagaagtaagatg |
562 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| ||| |
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| T |
41260183 |
attgtaataaatatgataaatatttatttttaatggattttatata--ggttgaattgaaatagtttgaagattgagatttgaggcatagaggtaaaatg |
41260280 |
T |
|
| Q |
563 |
gattttgcttatggacctggaagaaatcatctctttgttcctgggcctaccaa |
615 |
Q |
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||||||||||||||||||| |||||| ||| | |||||||| ||| ||||||| |
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| T |
41260281 |
gattttgcttatggacctgaaagaaaccatttatttgttcccgggtctaccaa |
41260333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 41259715 - 41259903
Alignment:
| Q |
1 |
taattctcatttcattatcatctttttctctttccaattgaaaatgtttttggaattgaaaaattcaagttttgaggatatatgtagatgatgatcttgt |
100 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||| || ||| ||| ||||||||| | |
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| T |
41259715 |
taattttcatttcattatcatcttattctctttccaatcaaaaaatgttttggaattggaaaattcaagttttgaagacata-gta---gatgatcttat |
41259810 |
T |
|
| Q |
101 |
ttataaat--cacactgttaccacttttaatcattgtaaacaaaaagttatattggtaccaatttttgtttgtaacaatattagggtcaaagct |
192 |
Q |
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|||||||| ||||||||||||||||| |||||||||||| ||| | |||||||| || |||||||| |||||||||||||||||||||||||| |
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| T |
41259811 |
ttataaatcacacactgttaccactttgaatcattgtaaa-aaataattatattgttaacaatttttttttgtaacaatattagggtcaaagct |
41259903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 41260006 - 41260042
Alignment:
| Q |
292 |
aattggagatttatttagtagcaagtccatataacac |
328 |
Q |
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| T |
41260006 |
aattggagatttatttagtagcaagtccatataacac |
41260042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 609
Target Start/End: Original strand, 16789935 - 16789987
Alignment:
| Q |
557 |
aagatggattttgcttatggacctggaagaaatcatctctttgttcctgggcc |
609 |
Q |
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| T |
16789935 |
aagatggattatgttaatggaccaggaagaaaccatctctttgttccagggcc |
16789987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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