View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_7 (Length: 607)
Name: NF13900_low_7
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 590
Target Start/End: Original strand, 6971272 - 6971855
Alignment:
| Q |
7 |
gagatgaatcaagggagacttgtagagagagttgtgtggaggataaatttatttactaacgccctatagatacaattatatattaatatttggtgggtga |
106 |
Q |
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| T |
6971272 |
gagaagaatcaagggagacttgtagagagagttgtgtggaggataaatttatttactaacgccctatagatacaattatatattaatatttggtgggtga |
6971371 |
T |
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| Q |
107 |
tcagtaaaaatctctataaacagtctttaaatcttgaggtcagctctaattttgacgagccctgaaaatccaactcacctaaactttatattagaatgat |
206 |
Q |
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| T |
6971372 |
ttagtaaaaacctctataaacagtctttaaatcttgaggtcagctctgattttgatgagtcctgaaaatccaactcacctaaactttatattagaatgat |
6971471 |
T |
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| Q |
207 |
gttttttatattagtgcttataaatatggccccatagagagggagagagattgtgtgcatgtattaaataatgatttcaaattatattattattaatggg |
306 |
Q |
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| T |
6971472 |
attttttatattagtgcttataaatatggccccatagagagggagagagattgtgtgcatgtattaaataatgatttcaaattatattattattaatggg |
6971571 |
T |
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| Q |
307 |
attttgcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtac |
406 |
Q |
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| T |
6971572 |
attttgcaggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtac |
6971671 |
T |
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| Q |
407 |
agtatctgggaaatcattgcagcaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatggtgaagattggaatcaccaacgtcac |
506 |
Q |
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| T |
6971672 |
agtatctgggaaatcattgcaacaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatggtgaagattggaatcaccaacgtcac |
6971771 |
T |
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| Q |
507 |
cttgtttcccctgcattcatgggagaaaaacttaaggtattgaaaaatcgaggaaaatgtattcggtgcaattaggatatccct |
590 |
Q |
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| T |
6971772 |
attgtttcccctgcattcatgggagaaaaacttaaggtattgaaaaatcgaggaaaacgtattcggtgcaattggggtatccct |
6971855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 314 - 529
Target Start/End: Original strand, 1266471 - 1266686
Alignment:
| Q |
314 |
aggaaagagattcatatattggaatggaatagagccaaggatgtgcctcacagaggctgcattgatcaaggagtttctttcaaagtatagtacagtatct |
413 |
Q |
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| T |
1266471 |
aggaaagaggtatatatattggaatggtccagagccaaggttgtgtttgacagaaactgaattgataaaagagtttctttcaaaatacagtacagtatct |
1266570 |
T |
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| Q |
414 |
gggaaatcattgcagcaacaacaaggttccaagcattttattggaaaaggcttgttaatggcaaatggtgaagattggaatcaccaacgtcaccttgttt |
513 |
Q |
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| T |
1266571 |
gggaaatcatggttacaaaaacagggttcaaaacatttcattggagaaggagtattgatggcaaatggtgaaaattggtatcaccaacgtcacattgttg |
1266670 |
T |
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| Q |
514 |
cccctgcattcatggg |
529 |
Q |
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| T |
1266671 |
cccctgcattcatggg |
1266686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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