View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13900_low_8 (Length: 553)
Name: NF13900_low_8
Description: NF13900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13900_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Complemental strand, 47283232 - 47282714
Alignment:
| Q |
14 |
ttcttcagaatatatccaaacaatgtagttttaggaactcaaacggtttattggtaatgaagattgaaattaaaatattccatccttatagatacaagga |
113 |
Q |
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| T |
47283232 |
ttctttagaatatatccaaacaatgtagttttaggaactcaaacggtttattggtaatgaagattgaaattaaaatattccatccttatagatacaagga |
47283133 |
T |
|
| Q |
114 |
gatagagaagaaaataacac-tttctccatttcaaaacgagcgtcactttatatnnnnnnnttgtttcgaaatgaacataatttcaattttcgagtagat |
212 |
Q |
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| T |
47283132 |
gatgaagaagaaaataacacatttctccatttcaaaacgagtgtcactttatataaaaaa-ttatttcgaaatgaacataatttcaattttcaattagat |
47283034 |
T |
|
| Q |
213 |
aagtgaaaccatannnnnnnnnaa--ataaacaattgagttttaggaacc-aaataatgtattagaaatatgaatgacnnnnnnnnnnnntatatccata |
309 |
Q |
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| T |
47283033 |
gagtgaaaccatatttttcttttagaataaacagttgagttttaggaacccaaataatgtattagaaatatgaatgacaaaaaaa------aaatccata |
47282940 |
T |
|
| Q |
310 |
aacggggataatgtccacacggacatgagacaaataccgtaatgattatccctctaactgagaagtggctcgagtgcaatgagtggaggaatgtggtttc |
409 |
Q |
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| T |
47282939 |
aacggggataatgtccacacggacatgagacaaataccgtaatgattatctctctaactgagaagtggctcgagtgcaatgagtggaggaatgtggtttc |
47282840 |
T |
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| Q |
410 |
aggataagtgatatttcttagaactgaacttccattaatatttgggtgtgcataaaaaatggacaccaagttaattttgagggaagtttccatcttatgt |
509 |
Q |
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| T |
47282839 |
aggataagtgatatttcttagaactgaacttccaaatatatttgggtgtgcataaaaaatggaca-caagttaattttgagggaagtttccatcttatgt |
47282741 |
T |
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| Q |
510 |
gtagtcatcatataggtagcgtgtgaa |
536 |
Q |
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| T |
47282740 |
gtagtcatcatataggtagcgtgtgaa |
47282714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 14 - 152
Target Start/End: Complemental strand, 47304467 - 47304329
Alignment:
| Q |
14 |
ttcttcagaatatatccaaacaatgtagttttaggaactcaaacggtttattggtaatgaagattgaaattaaaatattccatccttatagatacaagga |
113 |
Q |
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||||| ||||||| || ||| ||| ||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| | | | |
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| T |
47304467 |
ttcttgagaatatctctaaagaattgagttttaagaactcaaaagttttattggtaatgaagattgaaattaaaataatccatccttatagatataggaa |
47304368 |
T |
|
| Q |
114 |
gatagagaagaaaataacactttctccatttcaaaacga |
152 |
Q |
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| T |
47304367 |
gatggagaagaaaataatattttctccatttcaaaacga |
47304329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 47284226 - 47284145
Alignment:
| Q |
20 |
agaatatatccaaacaatgtagttttaggaactcaaacggtttattggtaatgaagattgaaattaaaatattccatcctta |
101 |
Q |
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|||||||||| ||||||| ||||||| |||| |||| ||| |||||| ||||||||||||||| ||||| |||||||||| |
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| T |
47284226 |
agaatatatctaaacaattgagttttatgaacccaaatggtgtattggggatgaagattgaaattgaaataatccatcctta |
47284145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 47305836 - 47305788
Alignment:
| Q |
53 |
caaacggtttattggtaatgaagattgaaattaaaatattccatcctta |
101 |
Q |
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| T |
47305836 |
caaaaggtgtattggaaatgaagattgaaattaaaataatacatcctta |
47305788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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