View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13901_high_1 (Length: 477)
Name: NF13901_high_1
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13901_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 3873250 - 3873673
Alignment:
| Q |
1 |
acacaaatttaatctaaactgtttaagacatagctcccctgtgtcaaccattaatgtcctcacatggatagctgtttaaactaattttatctttggacct |
100 |
Q |
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| T |
3873250 |
acacaaatttaatctaaactgtttaagacatagctcccctgt--caaccattgatgtcctcacatggatagctgtttaaactaattttatctttggacct |
3873347 |
T |
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| Q |
101 |
ataatctaattttctttttcccattttgatgcaatcagtagagtgtaagaatggttttacattcttttttctatcaaaataataataaaaaatttatatc |
200 |
Q |
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| T |
3873348 |
ataatctaattttcttttacccattttgatgcaatcagtagagtgtaagagtggttttatattcttttttctgtc-aaataataataaaaaattcatatc |
3873446 |
T |
|
| Q |
201 |
attctttagataattattgagcattgagggttgggtatgtcacctgatttaagttaatgattaagaagttggagttctagacttcaaattctaacaaatn |
300 |
Q |
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| T |
3873447 |
attctttagataatt-------attgagggttgggtatgtcacctgatttaagttaatgattaagaagttggagttctggacttcaaattctaacaaata |
3873539 |
T |
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| Q |
301 |
nnnnnnnnnnnttaacatactaacattttccattnnnnnnnnncttgaaaattataggaccacgtaaaaaag-agataataatctagaactaacataaga |
399 |
Q |
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|||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
3873540 |
aaaaaaac----taacatactaacattttccattaaaaaaaaacttgaaaattacaggaccacataaaaaagaagataataatctagaactaacataaga |
3873635 |
T |
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| Q |
400 |
gatagatgcagttgcaaggctgtaagcaactatatcga |
437 |
Q |
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| T |
3873636 |
gatagatgcagttgcaagggtgtaagcaactatatcga |
3873673 |
T |
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