View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13901_high_10 (Length: 238)
Name: NF13901_high_10
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13901_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36374077 - 36373845
Alignment:
| Q |
1 |
tttccttagctctctttctctcaaaagcctttccaatctcgacctcggtgttaaaggaagactgtgattgttcccctgcatacgcctgacctgaaatttt |
100 |
Q |
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| T |
36374077 |
tttccttagttctctttctctcaaaagcctttccaatctcgacctcggtgttaaaggaagactgtgattgttcccctgcatacgcctgacctgaaatttt |
36373978 |
T |
|
| Q |
101 |
ccattatttgaacttattttacagtccagtacaaaataacagtcgataatgttcaatctatgaagcact------------gacacagacgtcagacaca |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
36373977 |
ccattatttgaacttattttacagtccagtacaaaataacagtcgataatgtttaatctatgaagcactgacagagacactgacacagacgtcagacaca |
36373878 |
T |
|
| Q |
189 |
atactggtacaaattttgaaaaattgaagtaat |
221 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
36373877 |
atattggtacaaattttgaaaaattgaagtaat |
36373845 |
T |
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