View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13901_high_3 (Length: 384)
Name: NF13901_high_3
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13901_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 347
Target Start/End: Original strand, 48533127 - 48533500
Alignment:
| Q |
6 |
gaaatgaattgagaaaaatatcaaatagaaatgaattaagtttgtt---------ccatgaactaaaccaacaataacaaaa-catatactatactagaa |
95 |
Q |
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| T |
48533127 |
gaaatgaattgagaaaaatatcaaatagaaatgaattaagtttgttttgtttgttccatgaaccaaaccaacaataacaaaaacatatactatactagaa |
48533226 |
T |
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| Q |
96 |
tgcttttagaaacagcctaaagaacaacaacagaactaggctaggctgg----tgctgcggagttgatgatgtaagataccacaatgaataataagcata |
191 |
Q |
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| T |
48533227 |
tgcttttagaaacagcctaaagaacaacaacagaactaggctaggctggctggtgctgcggagttgatg---taagataccacaatgaataataagcata |
48533323 |
T |
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| Q |
192 |
agccacatagagatgtaagagaccccaataacttgcggatgcggaaggtatgagtgttgatctgatctttgtgagagaggtctcttgcgaggctaaag-- |
289 |
Q |
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| T |
48533324 |
agccacatagagatgtaagagaccccaataacttgcggatgcggaaggtatgagtgttgatctgatctttgtgagagaggtctcttgcgaggctaaagaa |
48533423 |
T |
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| Q |
290 |
-------------------aagcaaattgctaaagaagataccgcaattgtcacattgcgatcagaataatgaaggt |
347 |
Q |
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| T |
48533424 |
gaaggcgccacttgcaaagaagcaaattgctaaagaatataccgcaattgtcacattgcgatcagaataatgtaggt |
48533500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 272
Target Start/End: Original strand, 48536225 - 48536336
Alignment:
| Q |
160 |
gatgtaagataccacaatgaataataagcataagccacatagagatgtaagagaccccaataacttgcggatgcggaaggtatgagtgttgatctgatct |
259 |
Q |
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| T |
48536225 |
gatgtaagttaccacagtgaataataaacataagccacatagagatgtaagata-cccaatagcctgaggacccggaatctacgagtgttgatctgatct |
48536323 |
T |
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| Q |
260 |
ttgtgagagaggt |
272 |
Q |
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| T |
48536324 |
atgtgagagaggt |
48536336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 48536082 - 48536193
Alignment:
| Q |
45 |
gtttgttccatgaactaaaccaacaataacaaaacatatactatactagaatgcttttagaaacagcct-----aaagaac-----aacaacagaactag |
134 |
Q |
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| T |
48536082 |
gtttgttccatgaaccaa-ccaacaataacaagacata--ctatactggaatgcttttataaacagcctaaaccaaagaacaacgtaacaacagaactag |
48536178 |
T |
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| Q |
135 |
gctaggctggtgctg |
149 |
Q |
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| T |
48536179 |
gctaggctggtgctg |
48536193 |
T |
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