View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13901_high_4 (Length: 343)
Name: NF13901_high_4
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13901_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 42190144 - 42189818
Alignment:
| Q |
1 |
ctttttaggcttaaactaaatgtgcattggaacctgaggggaaattatgagttctattgctgcttatattggttcctccacttgcatccaagtttaattt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
42190144 |
ctttttaggcttaaactaaatatgcattggaacctgaggggaaattatgagttctattgctgcttatattggttcttccacttgcatccaagtttaattt |
42190045 |
T |
|
| Q |
101 |
cacctgttgggattgatggtgaagtataatttctacatcagatttgagatttaactatttaagccaaaatttaactaaatcgacagattcagattggacc |
200 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42190044 |
cacctattgggattgatgatgaagtataatttctacatcagatttgagatttaactatttaagccaaaatttaactaaatcgacagattcagattggacc |
42189945 |
T |
|
| Q |
201 |
gataatctatgtatgtacgtacctggtgtgtgaaaggaccattaatttggagtatgaaggacaacc-----tttgatacagaaccgctcacagaaattat |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42189944 |
gataatctatgtatgtacgtacctggtgtgtgaaaggacc----atttggagtatgaaggacaacctttaatttgatacagaaccgctcacagaaattat |
42189849 |
T |
|
| Q |
296 |
gcaaacagatcaacgatgagatgcattagat |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
42189848 |
gcaaacagatcaacgatgagatgcattagat |
42189818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 185 - 326
Target Start/End: Original strand, 19533328 - 19533463
Alignment:
| Q |
185 |
agattcagattggaccgataatctatgtatgtacgtacctggtgtgtgaaaggaccattaatttggagtatgaaggacaacctttgatacagaaccgctc |
284 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||| ||||||| ||||||| |||||| ||||| |
|
|
| T |
19533328 |
agattcagattggatcgataatttatgtatgtacgtacctgttgtgtgaaaggacc----atttggagtacgaaggacgacctttg--acagaaacgctc |
19533421 |
T |
|
| Q |
285 |
acagaaattatgcaaacagatcaacgatgagatgcattagat |
326 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
19533422 |
atagaaattatgcaaacagatcgacgatgagatgccttagat |
19533463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University