View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13901_high_6 (Length: 333)

Name: NF13901_high_6
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13901_high_6
NF13901_high_6
[»] chr5 (6 HSPs)
chr5 (63-228)||(36001654-36001822)
chr5 (227-273)||(36001842-36001888)
chr5 (63-131)||(36012872-36012940)
chr5 (63-229)||(36015599-36015763)
chr5 (227-291)||(36013037-36013099)
chr5 (227-276)||(36015795-36015844)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 36001654 - 36001822
Alignment:
Q  63 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga 162  Q
    |||||||||| || ||| | ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  36001654 ccatcaacaacgcttttgctgaccgatcaagtgcattgttgacagttcaaacactttcatcagaactagcttctttacattcacggattgagaagctcga 36001753  T
Q  163 atttgct---tccataatatttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagc 228  Q
    | |||||   |||| |||||||||||||||||||||| || ||  |||||||||||| |||||||||||    
T  36001754 agttgcttcatccagaatatttggtggagacaagtctaggatgcggaaaattgaagaattgaaagaagc 36001822  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 36001842 - 36001888
Alignment:
Q  227 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcata 273  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36001842 gctaaaatttgtgcagatagagagtatgaacgaatcaaggtaacata 36001888  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 36012872 - 36012940
Alignment:
Q  63 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactag 131  Q
    ||||||||||||||  ||||||   || |||||||||||||| |||||||||||||| |||||||||||    
T  36012872 ccatcaacaatgcaacttccgatcaatgaagtgcattgttgatggttcaaacactcttatcagaactag 36012940  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 229
Target Start/End: Original strand, 36015599 - 36015763
Alignment:
Q  63 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga 162  Q
    ||||||| ||||||||||||||| ||||||||||||||  ||  |||||||||      ||||||| | |||||||| ||||||  ||| ||||||||||    
T  36015599 ccatcaataatgcattttccgactgatcaagtgcattggcgatagttcaaaca-----ttcagaac-aacttctttaaattcactaattgagaagctcga 36015692  T
Q  163 atttgct---tccataat-atttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagct 229  Q
    | |||||   |||| ||| |||||  ||||||| |||| |||||  ||||||||||| |||||||||||||    
T  36015693 agttgcttcatccagaataatttgacggagacaggtctaggttgcggaaaattgaagtgttgaaagaagct 36015763  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 36013037 - 36013099
Alignment:
Q  227 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatagatatattttttgttt 291  Q
    |||||||| |||||||||||||  |||||| ||||||||||| || |||| || |||||||||||    
T  36013037 gctaaaatttgtgcagatagag--tatgaatgaatcaaggtaacaaataggtacattttttgttt 36013099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 36015795 - 36015844
Alignment:
Q  227 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatag 276  Q
    |||||||| |||| ||||||||| ||| |||||||||||||| |||||||    
T  36015795 gctaaaatttgtgaagatagagaatatcaacgaatcaaggtaacatatag 36015844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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