View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13901_high_7 (Length: 266)
Name: NF13901_high_7
Description: NF13901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13901_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 30614188 - 30614430
Alignment:
| Q |
10 |
agatgaatcagggtaaccagaaggaggttccatgagatcaaattcggttaaatcttttcccattgaatatctagctggtgttagagtgtaacc----aat |
105 |
Q |
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| T |
30614188 |
agatgaatcagggtaaccagaaggaggttccatgagatcaaattcggttaaatcttttcccattgaatatctagctggtgttagagtgtaaccaaccaat |
30614287 |
T |
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| Q |
106 |
cataaccgaactagcagtgcaataatgaagagctttgatacctaaacgttttgatatagatggaagccaatgagtgaaatcataaaaaacaatgtgaggt |
205 |
Q |
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| T |
30614288 |
cataaccgaactagcagtgcaataatgaagagctttgatacctaaacgttttgatatagatggaagccaatgagtgaaatcataaaaaacaacgtgaggt |
30614387 |
T |
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| Q |
206 |
ttaagatttgagagatgagtttcaatatcatgttgagttaggt |
248 |
Q |
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| T |
30614388 |
ttaagatttgagagatgagtttcaatatcatgttgagttaggt |
30614430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 30612172 - 30612410
Alignment:
| Q |
10 |
agatgaatcagggtaaccagaaggaggttccatgagatcaaattcggttaaatcttttcccattgaatatctagctggtgttagagtgtaaccaatcata |
109 |
Q |
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| T |
30612172 |
agatgaaccagggtaaccagaaggaggttgcattagatcaaattcggttaaatcttttccctttgaatatctagatggtgctagagtgtaaccaatcatg |
30612271 |
T |
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| Q |
110 |
accgaactagcagtgcaataatgaagagctttgatacctaaacgttttgatatagatggaagccaatgagtgaaatcataaaaaacaatgtgaggtttaa |
209 |
Q |
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| T |
30612272 |
attgaactaataatgcaataatgaaaagctttgatgtctaaacgtttggttaaagatggaatccaatgagtgaaatcatagaaaacaatttgaggtttga |
30612371 |
T |
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| Q |
210 |
gatttgagagatgagtttcaatatcatgttgagttaggt |
248 |
Q |
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| T |
30612372 |
gatttgtgagatgagtttcaatgtcaggttgagtaaggt |
30612410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 30594828 - 30595062
Alignment:
| Q |
14 |
gaatcagggtaaccagaaggaggttccatgagatcaaattcggttaaatcttttcccattgaatatctagctggtgttagagtgtaaccaatcataaccg |
113 |
Q |
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| T |
30594828 |
gaatctgggtaaccataaggtggttgcatgagatcaaattcagttaaattgtttccctgtgaatatctagctggtgttagactataaccaaccatgattg |
30594927 |
T |
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| Q |
114 |
aactagcagtgcaataatgaagagctttgatacctaaacgttttgatatagatggaagccaatgagtgaaatcataaaaaacaatgtgaggtttaagatt |
213 |
Q |
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| T |
30594928 |
aactaataatgcaataatgaaaagctttgatgcctaaacgcttggttaaagatggaatccaatgagtgaaatcatagaaaacaatttgaggtttgagatt |
30595027 |
T |
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| Q |
214 |
tgagagatgagtttcaatatcatgttgagttaggt |
248 |
Q |
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| T |
30595028 |
tgtgagatgagtttcaatgtcaggttgagtaaggt |
30595062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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